PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071358.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 309aa    MW: 35323.8 Da    PI: 6.2386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-182774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
   XP_011071358.1 27 RGPWTVEEDFTLINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 74
                     89********************************************97 PP
2Myb_DNA-binding51.42.6e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_011071358.1  80 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1282278IPR017930Myb domain
SuperFamilySSF466897.19E-3124121IPR009057Homeodomain-like
SMARTSM007178.6E-152676IPR001005SANT/Myb domain
PfamPF002492.0E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-222881IPR009057Homeodomain-like
CDDcd001673.65E-112974No hitNo description
SMARTSM007171.3E-1479127IPR001005SANT/Myb domain
PROSITE profilePS5129418.70779129IPR017930Myb domain
PfamPF002495.2E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2382128IPR009057Homeodomain-like
CDDcd001673.82E-7100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEQGDGSRVG NVDVQSEEEN NNMDLRRGPW TVEEDFTLIN YIAHHGEGRW NSLARSAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AAASSTTATT TYHINNQNSS  180
NLNMGQNQIL LPHPNNIGGV HTYTPENSSA AASSESFGTP VSELTECYNN YPAVHNSNNQ  240
GNNQDYYPAN QLSYGDQSLT SPTAGYNFNQ GLDFMEQNSE WMEGGDGSDN LWNVDDMWFL  300
QQQFNISNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252212122120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071358.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071358.10.0transcription factor MYB108
SwissprotQ9FGY33e-93MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2G9I0Y21e-147A0A2G9I0Y2_9LAMI; Transcription factor, Myb superfamily
STRINGPOPTR_0010s15970.11e-126(Populus trichocarpa)
STRINGXP_009612140.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-88myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]