PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071328.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 973aa MW: 107925 Da PI: 7.2156

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	7e-41	134	211	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCevhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_011071328.1 134 VCQVDDCKADLSSAKDYHRRHKVCEVHSKATRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 211 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.3E-33	128	196	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.325	132	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.59E-38	133	213	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-29	135	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.63E-9	746	867	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.1E-8	759	868	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.49E-7	759	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MKVVGKKSME WDLNDWRWDG DLFMASPVNS VPSDCRSRQF LPVGSDIPVK TGASSSFPSG 60 TDEVMLGDER VKRDLEKRRR SVEANEPLND EAGSLNLKLG GHVFPVMERE VVDKWEDKSG 120 KKTKVSSTSS TRAVCQVDDC KADLSSAKDY HRRHKVCEVH SKATRALVGN VMQRFCQQCS 180 RFHVLQEFDE GKRSCRRRLA GHNKRRRKTH PENVVSATNL NDEQGSNYLL ISLLRILSNL 240 HTSSSDQTKD QDLLCHLLRN LAGSSNEKNT AGLLPVSQDL QNVVASLGTA LKDTTMPAGL 300 GVTTPSPNLT LKNTVPDNAQ AGVAHNVSAS QQSALLFPEN ASNLSKANAS DTTVGRMKLN 360 NIDLNNVYDG SQDCIEDQQD NVTPENLGNV SAAVPFWLCK DLQQSSPPHN SGNSGSTQSH 420 SPSTSSGEAQ SRTDRIVFKL FGKDPSDFPL ALRKQILDWL SSSPTDIESY IRPGCVVLTI 480 YLCMDKSTWD ELYCNLNSTL GRLLESSAES FWRTGWIYTR VQHRATFVYN GEVVLDAPLP 540 LNIHRNCRIS SIKPIAVAFS ESVHFVVKGF NLSRATSRLL CALEGKYLVQ ENCADMTGAA 600 DSFVQHQEIQ CLGFSCFIPN IIGRGFIEVE DHSLSSSFFP FIVAEKDVCS EICSLESIID 660 GADTVYENAD EVRARDQALD FVHEMGWLLH KNRLIFRLGA SNGNMDPFSF KRFRWLIEFA 720 IDHDWCAVVK KLLNILLDGT VDSGQYTSTL VALLEIGLLH RAVRRNSRSM VEFLLEYHPS 780 GALDNRGPEE KQLDEGQYLF KPDSMGPGGL TPLHVAASLD SSENVLDALT ADPGSVGIEA 840 WKKARDSMGL TPHDYACLRG HYSYVHLVQR KLKKKSGDGQ VVVDIPGMLL DGNNVKQKIG 900 NTSKSRKLGV FQTEXKLSYG RWRASVTIYR PAMVSMVAIA AVCVCAALLF KSSPEVLYSF 960 RPFRWELLKY GSE

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MKVVGKKSME WDLNDWRWDG DLFMASPVNS VPSDCRSRQF LPVGSDIPVK TGASSSFPSG  60
TDEVMLGDER VKRDLEKRRR SVEANEPLND EAGSLNLKLG GHVFPVMERE VVDKWEDKSG  120
KKTKVSSTSS TRAVCQVDDC KADLSSAKDY HRRHKVCEVH SKATRALVGN VMQRFCQQCS  180
RFHVLQEFDE GKRSCRRRLA GHNKRRRKTH PENVVSATNL NDEQGSNYLL ISLLRILSNL  240
HTSSSDQTKD QDLLCHLLRN LAGSSNEKNT AGLLPVSQDL QNVVASLGTA LKDTTMPAGL  300
GVTTPSPNLT LKNTVPDNAQ AGVAHNVSAS QQSALLFPEN ASNLSKANAS DTTVGRMKLN  360
NIDLNNVYDG SQDCIEDQQD NVTPENLGNV SAAVPFWLCK DLQQSSPPHN SGNSGSTQSH  420
SPSTSSGEAQ SRTDRIVFKL FGKDPSDFPL ALRKQILDWL SSSPTDIESY IRPGCVVLTI  480
YLCMDKSTWD ELYCNLNSTL GRLLESSAES FWRTGWIYTR VQHRATFVYN GEVVLDAPLP  540
LNIHRNCRIS SIKPIAVAFS ESVHFVVKGF NLSRATSRLL CALEGKYLVQ ENCADMTGAA  600
DSFVQHQEIQ CLGFSCFIPN IIGRGFIEVE DHSLSSSFFP FIVAEKDVCS EICSLESIID  660
GADTVYENAD EVRARDQALD FVHEMGWLLH KNRLIFRLGA SNGNMDPFSF KRFRWLIEFA  720
IDHDWCAVVK KLLNILLDGT VDSGQYTSTL VALLEIGLLH RAVRRNSRSM VEFLLEYHPS  780
GALDNRGPEE KQLDEGQYLF KPDSMGPGGL TPLHVAASLD SSENVLDALT ADPGSVGIEA  840
WKKARDSMGL TPHDYACLRG HYSYVHLVQR KLKKKSGDGQ VVVDIPGMLL DGNNVKQKIG  900
NTSKSRKLGV FQTEXKLSYG RWRASVTIYR PAMVSMVAIA AVCVCAALLF KSSPEVLYSF  960
RPFRWELLKY GSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	126	208	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	209	KRRRKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071328.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1