PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071273.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 337aa    MW: 37846.8 Da    PI: 6.267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+d+++q+G g+W++ +++ g+ R++k+c++rw +yl
   XP_011071273.1 14 KGPWSPEEDEKLLDYIQQHGHGSWRALPSKAGLERCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.87.7e-1668112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g  + +E++ +++++++lG++ W+tIa++++ +Rt++++k++w+++l
   XP_011071273.1  68 GHISLQEEQTIIQLHALLGNR-WSTIASHLP-KRTDNEIKNYWNTHL 112
                      666889***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.001961IPR017930Myb domain
SuperFamilySSF466893.59E-3011108IPR009057Homeodomain-like
SMARTSM007177.7E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-161461IPR001005SANT/Myb domain
CDDcd001676.79E-121661No hitNo description
PROSITE profilePS5129424.64662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2565117IPR009057Homeodomain-like
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1468112IPR001005SANT/Myb domain
CDDcd001672.43E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWSPE EDEKLLDYIQ QHGHGSWRAL PSKAGLERCG KSCRLRWTNY  60
LRPDIKRGHI SLQEEQTIIQ LHALLGNRWS TIASHLPKRT DNEIKNYWNT HLKKRLIKMG  120
IDPTTHRPNN LALTCGESKD SANLSHLAQW ESARLEAEAR LVHETKPIML NPHHYYQLPS  180
TTPPPPPPPD QPCLDVFKVL AWTNPGEDIS TVILNGLLPP IPILNSSDNT LPIPTLGLCN  240
GNLSITDINS IETSGACTTG KPNNNLFYDD HQHVVKGMME NSEYSNDARI DPFHPTYVAD  300
SLSFPSFMED LTDLQPSSIS TADDVCWGVV EEDKIYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071273.10.0myb-related protein 306-like
SwissprotQ9LE631e-100MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H6Z71e-132A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRINGMigut.E00076.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-99myb domain protein 16