PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071260.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HSF

Protein Properties

Length: 330aa MW: 37651.6 Da PI: 6.412

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.1	1.6e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++ XP_011071260.1 14 FVMKTYQMVNDPTTNGLIMWGKANNSFIVVEPLDFSERILPAYFKHHNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTQLLSN 99 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k+ XP_011071260.1 100 IVRRKH 105 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.5E-49	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-32	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.0E-36	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.3E-17	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-28	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-17	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-17	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEINASNSNM VAPFVMKTYQ MVNDPTTNGL IMWGKANNSF IVVEPLDFSE RILPAYFKHH 60 NFSSFVRQLN TYGFRKVDPD KWEFANEWFL RGQTQLLSNI VRRKHAGKAY TAHLKHEDDE 120 DEEQLIMEIA KLKQEQKSLE QELESMNRRL EATERRPQQM MTFLCKVVED PEILPRMMLE 180 KVKMRRLTSS SGEKKRKIMI STASLNSLSS SSIKSEEDQE PISSSDGNLD VDSYCQSSPS 240 VEITSPEWLL YQRQSSTVAP MLRQEQYRNS YPHHSSSSPL LSSSGEYGGF VAFPPPVNSI 300 SGYYNNINGR VDTIVPPPPP YPFSLLGGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-23	4	103	19	129	Heat shock factor protein 1
5d5v_B	1e-23	4	103	19	129	Heat shock factor protein 1
5d5v_D	1e-23	4	103	19	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071260.1	0.0	heat stress transcription factor C-1-like
Swissprot	Q9LV52	1e-86	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A4D9A8E9	1e-141	A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRING	XP_009588171.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	6e-79	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]