PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24311 Da PI: 8.0291 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.4 | 7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++s rqvtfskRr+g+lKKA+ELSvLCd +va++i+s +gkl+ +ss XP_011071241.1 9 KRIEDNSARQVTFSKRRKGLLKKAKELSVLCDLDVALLIISRHGKLHHFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 40.2 | 1.5e-14 | 104 | 171 | 31 | 98 |
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 Lq R l +++Ls+ +L +Le++L+ +l++ R++K++lll++i+ l +kek+l ee+ L++k+ XP_011071241.1 104 LQIVERDLEEPLVDQLSVTDLLHLENELQAALTQTRTTKTHLLLDSISSLHEKEKMLVEEKGVLEEKI 171 666666666666789***********************************************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.254 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.37E-33 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.09E-29 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.848 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-11 | 113 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRRKLEMKR IEDNSARQVT FSKRRKGLLK KAKELSVLCD LDVALLIISR HGKLHHFSSN 60 NSLTEILERY HSHIEAESSP STAVCESLVE CSKHSRSVSC GELLQIVERD LEEPLVDQLS 120 VTDLLHLENE LQAALTQTRT TKTHLLLDSI SSLHEKEKML VEEKGVLEEK IGGSMTSGRT 180 KKVILDLNII PDAQMLKERA PEQRKWRERR EPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 6e-18 | 1 | 88 | 1 | 88 | MEF2 CHIMERA |
6bz1_B | 6e-18 | 1 | 88 | 1 | 88 | MEF2 CHIMERA |
6bz1_C | 6e-18 | 1 | 88 | 1 | 88 | MEF2 CHIMERA |
6bz1_D | 6e-18 | 1 | 88 | 1 | 88 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 210 | RKWRERRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071241.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071241.1 | 1e-152 | agamous-like MADS-box protein AGL27 isoform X4 | ||||
TrEMBL | B2DCP7 | 1e-69 | B2DCP7_9LAMI; RIN-like MADS-box protein | ||||
STRING | XP_009795052.1 | 4e-70 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 2e-42 | MIKC_MADS family protein |