PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 470aa MW: 51291.3 Da PI: 8.4873 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.6 | 1e-39 | 183 | 259 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL +hn+rrrk+q+ XP_011071232.1 183 CQVEGCNIDLSTAKEYHRKHRVCDSHSKCPKVVVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLCDHNARRRKPQQ 259 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.6E-33 | 175 | 244 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.052 | 180 | 257 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.67E-37 | 181 | 262 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.3E-30 | 183 | 256 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MSHFSEMDWN AKWDWENFVA FGSKPIESPK KLQLADWMLV DDGEIHTGSF NLSGCGGNSG 60 ASSSDGGHGS SAKSSISAST DSSTRDGMQT PNFMFSKFEG SSSNFGKKIE TKGAEIFATS 120 PAPEASIGSM EPLIGLKLGK RTYFENSGGG SNIKSTSFSV MPTPSPSTPK KTKSSGQNAP 180 VHCQVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVVVGGLE RRFCQQCSRF HGLSEFDEKK 240 RSCRRRLCDH NARRRKPQQE TIQLSSTRLP SPFYGGTQQM SFLLNSSPLV HSRTPANSSW 300 DNPCNSKFTL TKGFPSKSNG DGGTDQQLHM PGIKLPHVIN MQIAGNGLLA SKNPTSEVPN 360 PGSKGSLISS LDAAPEYRRA LSLLSSNSWD SCEPVSIPLH QPMHENGSSI NQPMIHMIPE 420 GVPLSSSEFW LSGQHSTYSR VQSLATNSNF QEIQLFKTPY DADFYSNMLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 174 | 256 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 255 | KKRSCRRRLCDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071232.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_020547500.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_020547501.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A2G9H1U3 | 0.0 | A0A2G9H1U3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00014.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 7e-60 | squamosa promoter binding protein-like 2 |