PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071180.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 227aa    MW: 26260.9 Da    PI: 7.4084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   XP_011071180.1 14 RGPWTMEEDSKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.51.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++ +++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_011071180.1  67 RGALTEAEEDMIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.019961IPR017930Myb domain
SuperFamilySSF466892.73E-2811108IPR009057Homeodomain-like
SMARTSM007172.8E-61363IPR001005SANT/Myb domain
PfamPF002491.8E-111461IPR001005SANT/Myb domain
CDDcd001671.12E-51661No hitNo description
PROSITE profilePS5129426.91662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2665117IPR009057Homeodomain-like
SMARTSM007172.4E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1567110IPR001005SANT/Myb domain
CDDcd001672.63E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRQPCCEKV GLRRGPWTME EDSKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL TEAEEDMIIE LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKMKLMG  120
LDPTTHKPIE QNTQYSAAES EEIHQKVEFH QEPVSFSQMQ ENTEGSAPIC GSNQDRSNSC  180
TKIFDMESSV LFQNKEPVGN FPMDLYQNWM DSPFVWDGFS CLEGSFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071180.11e-172protein ODORANT1
SwissprotQ50EX62e-73ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2G9I9G31e-119A0A2G9I9G3_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E00231.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-82myb domain protein 40
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]