PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071178.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 587aa    MW: 66001.2 Da    PI: 5.9535
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt +LH++Fv+av+q+ G ek  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_011071178.1 199 KARVVWTVDLHQKFVKAVNQI-GFEKVGPKKILDLMGVPWLTRENVASHLQKYRL 252
                     68*******************.9*******************************8 PP
2Response_reg83.85.2e-28201281109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k +y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_011071178.1  20 VLVVDDDPTWLKILEKMLKKCNY-EVTTCNLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 112
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  XP_011071178.1 113 ACDYLLKPIRMKELRN 128
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.5E-4517146No hitNo description
SuperFamilySSF521728.68E-3717145IPR011006CheY-like superfamily
SMARTSM004484.6E-3318130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.7919134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2520129IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.48E-3121134No hitNo description
SuperFamilySSF466893.23E-17197256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-21199252IPR006447Myb domain, plants
PfamPF002496.8E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDSSGFSSPR TDCFPAGLRV LVVDDDPTWL KILEKMLKKC NYEVTTCNLA REALDLLRER  60
KDGFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VRDIEGHESL EELQMMRSGI EQSDDGYFFS GDLVSGKKRK  180
DADNKHDDRV CGDPSSVKKA RVVWTVDLHQ KFVKAVNQIG FEKVGPKKIL DLMGVPWLTR  240
ENVASHLQKY RLYLSRLQKE NELKATFGGT KNSDISSKDP TGNVCLQNSI AQNATTVQQN  300
ILAKESYAVS GQNILIHNDE PKICEGNGKV IPSMPTTVSK KALFGDTADL AKSSTSRISF  360
NHSFGPLDSD VKSEPKIQAE YSWSAEVPSF QFKQEHTAHF HSDHGFDHLP LPMHHNQVDS  420
LERSLAHNPG TSSKESDTRA QAGLNNRRNQ GIKNVTQAEN TAALFSVQPE SHLTDCHAID  480
PIQCSIWNSK NHCLQQNLFD DLQSSQRNLL AGTGSALRLW GEEFNDYSSQ GDFYPPNTFL  540
GNIDPFGYSN HELIADVPPN LYESLKFDSE YPTDPVEYPI DQGLYIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17195257163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.10.0two-component response regulator ORR26
TrEMBLA0A4D8ZX820.0A0A4D8ZX82_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0010g02230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11