PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070990.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 337aa    MW: 38119.6 Da    PI: 6.3942
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.4e-332074155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt+eLH+rFv+av+qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  XP_011070990.1 20 KPRLKWTQELHQRFVDAVNQLGGAEKATPKSLMRIMGIHGLTLYHLKSHLQKYRL 74
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1661777IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-311877IPR009057Homeodomain-like
SuperFamilySSF466893.58E-161975IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-232075IPR006447Myb domain, plants
PfamPF002491.9E-82273IPR001005SANT/Myb domain
PfamPF143793.2E-23116162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAFQNVHDNE MSLVLSSDAK PRLKWTQELH QRFVDAVNQL GGAEKATPKS LMRIMGIHGL  60
TLYHLKSHLQ KYRLGRSQQS QIYHHSKPED YGGKQTNLFA STIFDEAKEP TNENLQITQA  120
LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLRKAQ ETLSEYSSCS IEAECAKAQL  180
SQLASMVDSG CPSSSFSVLT ESESSMLEHE RNKLFGRNGC SHESSLTSSE SSWRQDETEP  240
QHEVGENCKH ENVKMNNETA KSIELSLMEM HPVEKGPSEI QATNNEKSGA RSSSQQVNRI  300
SWFKDIDLNC KSMTDFGSGP RAIDLNDKGL ELFNGNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070990.10.0myb family transcription factor PHL8
SwissprotF4I2743e-76PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2G9H8E11e-138A0A2G9H8E1_9LAMI; Uncharacterized protein
STRINGMigut.L01279.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.15e-74G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]