PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070989.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 426aa    MW: 46684.7 Da    PI: 6.5078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16143188147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_011070989.1 143 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 188
                      899*****************************.***********996 PP
2Myb_DNA-binding54.82.2e-17195238146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_011070989.1 195 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 238
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
PROSITE profilePS5129417.632138189IPR017930Myb domain
SMARTSM007172.2E-14142191IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-27143236IPR009057Homeodomain-like
PfamPF002498.2E-16143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-25144196IPR009057Homeodomain-like
CDDcd001672.68E-13146187No hitNo description
PROSITE profilePS5129426.846190244IPR017930Myb domain
SMARTSM007174.4E-14194242IPR001005SANT/Myb domain
PfamPF002496.0E-14195237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20197243IPR009057Homeodomain-like
CDDcd001672.51E-11197237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MASKNCSSSV IYEASSATIN PNSCSASSCS GLGSSMVGMV FSDLRTLSIN PSFGLFSSQE  60
RESSSSSFCK SKADWGFPFS EDQDQTRNSE GKGSDSSDVF GENNEMIDLN TSLNEEDQEC  120
DMHALSSGKD PSNASGQSKL CARGHWRPAE DAKLKELVAL YGPQNWNLIA EKLEGRSGKS  180
CRLRWFNQLD PRINRRAFSE EEEERLMAAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM  240
ARKYREQSSA YRRRKMGQFV FKRMEDDDIP LVNASTSIQK EPPLPSFGGG GVIYNSGGGS  300
GGVFCGSVGS AHVASLGGAT LHNNGFWPPQ TSLGFFPGPP NTSTSTSDVM NIFNHSKPWD  360
IQANSYTQPH PHPQYPSLIT AIQHSNYHYA SDFTASPQQI SSIEPSAADQ ERITPTFIDF  420
LGVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331432437107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.10.0transcriptional activator Myb
SwissprotQ9SEZ42e-75MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2G9I2T90.0A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E00083.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]