PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070983.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 363aa    MW: 40900 Da    PI: 6.6999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-182067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++q+G g+W+t + + g+ R++k+c++rw +yl
   XP_011070983.1 20 KGPWTPEEDQKLLHYIQQHGHGSWRTLPPKAGLQRCGKSCRLRWKNYL 67
                     79********************************************97 PP

2Myb_DNA-binding52.41.2e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W+tIa++++ +Rt++++k++w+++l
   XP_011070983.1  73 RGKFSIQEEQTIIQLHALLGNR-WSTIAAHLP-KRTDNEIKNYWNSHL 118
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7991567IPR017930Myb domain
SuperFamilySSF466894.03E-3017114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-241770IPR009057Homeodomain-like
SMARTSM007175.9E-141969IPR001005SANT/Myb domain
PfamPF002491.7E-162067IPR001005SANT/Myb domain
CDDcd001672.00E-112267No hitNo description
PROSITE profilePS5129426.02468122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2571122IPR009057Homeodomain-like
SMARTSM007176.0E-1572120IPR001005SANT/Myb domain
PfamPF002491.9E-1573118IPR001005SANT/Myb domain
CDDcd001671.35E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEVKADDGGC WPDNVVELKK GPWTPEEDQK LLHYIQQHGH GSWRTLPPKA GLQRCGKSCR  60
LRWKNYLRPD IKRGKFSIQE EQTIIQLHAL LGNRWSTIAA HLPKRTDNEI KNYWNSHLKK  120
RLSNMGIDPT THKPKNHAFF CGGRSNDFAN LCHMAQWETA RLEAEARLVR ESKLMSNPST  180
HLLNKPTTAA PPPPRPPCLD VLKVWAWTNN PGKHMSTATT PSGLLTYNGG LQLNLSDNLG  240
PIPTVELFDQ NSSSITNINR VQLSGSWTVN GPPSTGYNYD QDDDEEEEVK GIIDDYSSSM  300
DQIHDMMIMT SNPVDYADPL WIPSSFMQGF TDLPPRINVS ETSGPSDNYV FQVVDANAFN  360
LTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27151222108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070983.10.0transcription factor MYB30-like
SwissprotQ9LE631e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H6Z71e-120A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRINGXP_010258093.11e-101(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-90myb domain protein 106