PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WRKY | ||||||||
Protein Properties | Length: 516aa MW: 56345.3 Da PI: 7.6925 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.8 | 1.3e-34 | 228 | 284 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+g+Hnh+ XP_011070969.1 228 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQITEIIYKGQHNHS 284 8****************************************.***************7 PP | |||||||
2 | WRKY | 107.5 | 6.5e-34 | 403 | 461 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+dpk+v++tYeg+Hnh+ XP_011070969.1 403 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAASDPKAVITTYEGKHNHD 461 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-30 | 220 | 286 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-27 | 225 | 286 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 227 | 285 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 228 | 286 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 228 | 283 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-37 | 388 | 463 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-30 | 395 | 463 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.182 | 398 | 463 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-40 | 403 | 462 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 404 | 461 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MADNKPPPPP PSSSKPPPTI TLPPRTAMDN FFTGVSPGPM TLVSNLFAEN DADSDCRSFS 60 QLLAGAISSP AALPNVRQNF AHPQPESRGG GGGTGEFRFQ QSRPAGLVVT QPLGMFTIPP 120 GLSPASLLDS PGFFSSSQDP FGMSHQQILA RVTAQAQNQM QIQPEYPSLS SAPALSASHL 180 QPFPSNASLQ QQISPSLPDP KIMKESSDIS HTDQKSQPAS FNVDKPTDDG YNWRKYGQKQ 240 VKGSEFPRSY YKCTHPNCPV KKKVERSLDG QITEIIYKGQ HNHSPPSKRT KDTGNANGTM 300 NPQGNSELGS DGRTGNLNEP KEGLPYLSST RDLEASQATP EHISGSSDSE EVGNAEARLD 360 DEDKPESKRS RNFEVQTSEQ ASSHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN 420 PYPRSYYKCT NPGCNVRKHV ERAASDPKAV ITTYEGKHNH DLPVARGSSH STANASLQLR 480 PHNSVADRSR ADGRMEFGSN EQQPVALLRF KEEQIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-43 | 228 | 463 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-43 | 228 | 463 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070969.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070969.1 | 0.0 | probable WRKY transcription factor 3 isoform X1 | ||||
Swissprot | Q9ZQ70 | 1e-168 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2G9GES3 | 0.0 | A0A2G9GES3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009794188.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4107 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-167 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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