PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 353aa MW: 39105.9 Da PI: 8.2295 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.8 | 2.7e-42 | 47 | 123 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC+vhsk++vv+v+g++qrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q XP_011070914.1 47 TCQVLGCNKDLSSSKDYHKRHKVCDVHSKTAVVIVNGIQQRFCQQCSRFHVLAEFDEGKRSCRKRLAGHNERRRKPQ 123 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-34 | 42 | 109 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.624 | 45 | 122 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.44E-40 | 46 | 126 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-32 | 48 | 121 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
VIDEKLAAPK EKNDNQFSVD NSVLSSPEPF VPAKRARITN LQSQIPTCQV LGCNKDLSSS 60 KDYHKRHKVC DVHSKTAVVI VNGIQQRFCQ QCSRFHVLAE FDEGKRSCRK RLAGHNERRR 120 KPQFDNHLGA AYFTTDASNF SRFLSGGFFG LQYNEPAMRS GHLKLEEEPS QISQLPAPMK 180 FSQSLPKSLL HLHGMGKQYP SKNCLNHSLS VQELSVGSNS SCALSLLSAQ SQNLVNNSAG 240 TSMPHPQIAQ ENLHADLCTI QNSAKCFGSD NLSPSIVNSS GTDQERSSVG LEVPQTELSQ 300 EPNAPRLKSY LSSEGANTVD LLELSIHLQR VEQQKHYTQF KLENGIFCHS TIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 43 | 121 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070914.2 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2G9FVV6 | 1e-122 | A0A2G9FVV6_9LAMI; Uncharacterized protein | ||||
STRING | Solyc05g012040.2.1 | 7e-96 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-49 | SBP family protein |