PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070889.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 524aa MW: 56420 Da PI: 6.0611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	347	395	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_011070889.1 347 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 395 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	342	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.90E-11	342	399	No hit	No description
PROSITE profile	PS50888	15.485	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	345	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	347	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	350	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MERAGNDANV EPAKGSENPV NFHEPNMSSD WHVHGNKITT VSIGLVTMCN SMAEPSACAS 60 APMIDSFGPP IWDQPINGQN SGYCNMNVQN VASTSSSLGA VKAGMGWTPN AMLSEGMILP 120 TVPGGVPQSL PHFPADSAFI ERAARFSCFN GGNFSEVVNH FPAPHPLNPH SWGLRPMRGP 180 DEVLGGNGSK ALLGMQSQRH QLHMAEVSNE ALISGERQTE GSPFKNEKKS ESFMASHEEA 240 KNGIDVFGNQ CDEAEFSGGG AQEELDQESS GKGLDLKKRK RTEQKTENNE APQPSIETAA 300 EIRQKGDQNP ASTSNPGAKH GKQASQGSDP PKEEYIHVRA RRGQATNSHS LAERVRREKI 360 SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDLNMEGLL 420 AKDVLQPRAG LLSSLVFPPD MPMPFPPLHP PQPGLVQGGL PGNSSDTLQS TPAGGGFRDP 480 TSQASRLWED ELHNVVHSGF NSSPPPNGQE TTVSLPLGHT KAEP

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MERAGNDANV EPAKGSENPV NFHEPNMSSD WHVHGNKITT VSIGLVTMCN SMAEPSACAS  60
APMIDSFGPP IWDQPINGQN SGYCNMNVQN VASTSSSLGA VKAGMGWTPN AMLSEGMILP  120
TVPGGVPQSL PHFPADSAFI ERAARFSCFN GGNFSEVVNH FPAPHPLNPH SWGLRPMRGP  180
DEVLGGNGSK ALLGMQSQRH QLHMAEVSNE ALISGERQTE GSPFKNEKKS ESFMASHEEA  240
KNGIDVFGNQ CDEAEFSGGG AQEELDQESS GKGLDLKKRK RTEQKTENNE APQPSIETAA  300
EIRQKGDQNP ASTSNPGAKH GKQASQGSDP PKEEYIHVRA RRGQATNSHS LAERVRREKI  360
SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDLNMEGLL  420
AKDVLQPRAG LLSSLVFPPD MPMPFPPLHP PQPGLVQGGL PGNSSDTLQS TPAGGGFRDP  480
TSQASRLWED ELHNVVHSGF NSSPPPNGQE TTVSLPLGHT KAEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	KKRKRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070889.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070889.1	0.0	transcription factor bHLH49 isoform X3
TrEMBL	A0A2G9I0E5	0.0	A0A2G9I0E5_9LAMI; Uncharacterized protein
STRING	XP_006484279.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-101	bHLH family protein