PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070834.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family RAV
Protein Properties Length: 374aa    MW: 40981.7 Da    PI: 8.9022
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.8e-1460108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  XP_011070834.1  60 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 108
                     689***9788.8*********3.....5*************************98 PP
2B3102.62.2e-32187289199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   +++
  XP_011070834.1 187 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRAGDIVSFQRSTGPDKQ 281
                     89****************************88999****************************************************88768888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l++ + ++
  XP_011070834.1 282 LYIDWKSR 289
                     88887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.24E-2560115No hitNo description
PfamPF008478.1E-960108IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1760116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2061116IPR001471AP2/ERF domain
SMARTSM003802.6E-3061122IPR001471AP2/ERF domain
PROSITE profilePS5103220.17861116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-42178292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-30185287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-29186275No hitNo description
SMARTSM010198.7E-25187290IPR003340B3 DNA binding domain
PfamPF023625.0E-29187289IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466187290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDGSCVDEST TSESVSITPA STSPAAAKSP ESLCRVGSGA SVIIDAENGV EAESRKLPSS  60
RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD TAAQRFRGRD AVTNFKPLSE  120
TEEDEVEAAF LNSHSKAEIV DMLRKHTYND ELEQSRRNYN GKRAGKDGPF SFSSGGDRAA  180
NAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGNT SKGVLLNFED MGGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKDLRAGDIV SFQRSTGPDK QLYIDWKSRN TGSNAAVAGV  300
VSGRAQPVQM FRLFGVNILE VPSNCTAPST ATATATVTAT AAIDSNGSCS SKRMRAMEIL  360
GLDCSKKQRV IDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6118430311130DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070834.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070834.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-152RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2G9GW460.0A0A2G9GW46_9LAMI; Uncharacterized protein
STRINGMigut.E00306.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-148related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]