PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 42983.7 Da PI: 8.7847 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4e-32 | 222 | 277 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_011070832.1 222 KARRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.468 | 219 | 279 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 219 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-18 | 220 | 280 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-27 | 222 | 277 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 224 | 275 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MLINSHNHTD FSHKMQRCQD YIHALEEERR KIQVFQRELP LCLELVTQAI EACKQQLSGT 60 SSEYNLHGQS ECSEQTSSDV PVFEEFIPIK RASSQSDGEE QESSKKPKND SDVSNKDGKN 120 CYDKNSQKSD WLRSVQLWNQ TSDPPPKEHS PRKVAVMEVK RNGSGGAFHP FKKEKSVATT 180 APSQGPAVNK SVPPASTSSA DTGGNSGGGN KKEEKEGQSQ RKARRCWSPE LHRRFLQALQ 240 QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPSVPNTTA TTQPPQFVVV 300 GGIWVPPEYA SMATTATSGE ACASGVATSN VGIYAPVASL PPPFRESSAS PKQRLNSKPM 360 HSDDRGSHSE CRGQSHSPAT SSSTHTTTAS PAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-14 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-14 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-14 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-14 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-14 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070832.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9FPE8 | 1e-107 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A2G9GW56 | 0.0 | A0A2G9GW56_9LAMI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03110.t01 | 1e-153 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5219 | 24 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-100 | G2-like family protein |
Publications ? help Back to Top | |||
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