PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070788.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 283aa    MW: 32381.5 Da    PI: 8.2991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++  +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_011070788.1 24 RGPWTLEEDNLLIQYISCHGEGRWNSLAKFAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding50.26e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_011070788.1  77 RGNLTPHEQLTILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3811975IPR017930Myb domain
SuperFamilySSF466894.03E-3122118IPR009057Homeodomain-like
SMARTSM007177.4E-152373IPR001005SANT/Myb domain
PfamPF002491.2E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-232578IPR009057Homeodomain-like
CDDcd001672.53E-112671No hitNo description
SMARTSM007172.9E-1476124IPR001005SANT/Myb domain
PROSITE profilePS5129419.44676126IPR017930Myb domain
PfamPF002491.9E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2379125IPR009057Homeodomain-like
CDDcd001672.22E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMMMSKGRSV PKSTSYEFGS ELRRGPWTLE EDNLLIQYIS CHGEGRWNSL AKFAGLKRTG  60
KSCRLRWLNY LKPDIKRGNL TPHEQLTILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQARQLK VDSNSKKFLE AIRTFWMPRL MEKMEQDSSL TSSPSSSISS METQNFTAPS  180
PVSSQVPQPS SKPGNGVNSS DSNYSAKISP LPAESLVTGK IQSENSLEDN YYYVGSPSYD  240
MQELEAQDIS LSECHVAEID WFWNTDELWQ FRKPGEVGVC LDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251812621128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070788.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7800931e-146KR780093.1 Rehmannia glutinosa R2R3-MYB protein (MYB17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070788.10.0transcription factor MYB62
SwissprotQ9C9G77e-87MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0K1SBH11e-134A0A0K1SBH1_REHGL; R2R3-MYB protein
STRINGSolyc05g009230.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-84myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]