PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070586.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 466aa    MW: 51555 Da    PI: 6.7929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011114136123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp Cgk + + ++  +H  ++
  XP_011070586.1 114 FECPVCGKGYASEEEVSVHVESC 136
                     89*****************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.5E-92652No hitNo description
CDDcd092121.45E-21167255No hitNo description
SuperFamilySSF1435035.1E-19172256IPR018997PUB domain
SMARTSM005801.8E-18173237IPR018997PUB domain
PfamPF094097.4E-17174245IPR018997PUB domain
SuperFamilySSF542361.32E-12324435IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.5E-9339433No hitNo description
PROSITE profilePS500339.284351435IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDEMRDKMKG LMKKVNGPFS SSLSGKFKGQ GRVLGSSSAS SSPSQSLPSS SSLRDTKPLP  60
QKVYNISERK LEDKKPEIRV SPNVNEKSEN GFDPYNSLIT SGKRNPNGYS LQVFECPVCG  120
KGYASEEEVS VHVESCLSVA DSSEENGSKE SDGIGNHLQT CVSRYMSGKP SDGSMEVIMR  180
LFRNVVKEPD NAKFRKVRMG NPKIKEAVGD LPGGVELLEC VGFELKEEDG EMWLMMEDPS  240
KERLGLIKIV ISLLEPKTAK ESMAMAPAKE STTAAPAKEE AVEPKLVDRQ IRVFFSVPES  300
VAARIEVPAS FYNLTAEELK READARKKKI EESKLLIPKS YREKQAQAAK KRYKRTIIRI  360
QFPDKVVLQA IFSPSESTGT LYEFVSAALK DPSLEFDLLH PVLIKRRVIP RFPAAGQRPV  420
TLEEEDLVPS ALIKFKPIET DDVVFTGLCN ELLEISEPLE SGSAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A1e-1430643523146Tether containing UBX domain for GLUT4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070586.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070586.10.0plant UBX domain-containing protein 2
SwissprotQ9ZU931e-173PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A2G9H6620.0A0A2G9H662_9LAMI; Putative ubiquitin regulatory protein
STRINGMigut.E00465.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1011266
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]