PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070559.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 628aa    MW: 69084.6 Da    PI: 6.6377
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_011070559.1 208 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 261
                     79*******************.********************************8 PP
2Response_reg761.4e-25241321109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+q+l+k  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a g  +++ + ++ G
  XP_011070559.1  24 VLVVDDDVICLRVLEQMLRKCMY-KVTSCSQATVALNLLRERKgcFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTNLVMRGIRHG 116
                     89*********************.****************************************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_011070559.1 117 ACDYLIKPIRDEELKN 132
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.8E-1624616IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.4E-4121145No hitNo description
SuperFamilySSF521721.42E-3421154IPR011006CheY-like superfamily
SMARTSM004484.6E-2922134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3923138IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-2324132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.44E-2725137No hitNo description
SuperFamilySSF466896.36E-20205265IPR009057Homeodomain-like
PROSITE profilePS5129410.655205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-29206266IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24208261IPR006447Myb domain, plants
PfamPF002498.9E-7210259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MACTSGGMSD VAPVPEQFPV GLRVLVVDDD VICLRVLEQM LRKCMYKVTS CSQATVALNL  60
LRERKGCFDI VLSDVHMPDM DGFKLLELVG LEMDLPVIMM SADGRTNLVM RGIRHGACDY  120
LIKPIRDEEL KNIWQHVVRK KWNEIKEHDY SGSMEDHDRQ KRAINDAEYA SSVNEGADEV  180
LKTQKKRRES KDEDETELEN DDPATTKKPR VVWSVELHQQ FVSAVNQLGI DKAVPKRILE  240
LMNVPGLTRE NVASHLQKFR LYLKRLSGVA QQQGGLPSTY CGPVEQNIKL ASLGRFDIQA  300
LAASGQLPPQ TLAALHAELL SRPPGNLVLP ALDQRTLLHS SIQGSKCVPV DQNVAYGQPL  360
IKCSSNIAKQ TSQPVMSNED GLSEFEAWSS KNLGDMVPAC NFGTVVETNS NMLISFIQQQ  420
QQKQSVIPEP SRSINVQPSC LVVPSQSSPN FQTGNSPVSV NQNCGFRNLA MDYNNPLLQS  480
NNSSGSGQNM EVECKPVPMH SEFGTAGSVS SASSCSKNIQ DSACQRVPSS PSTISVVMQV  540
PSMNRVQSSH SGKPDLVQVS TRNPVYVGKG PSIPSRFAVD EHELPLSNIG QVKLYAENNG  600
NKVKQEPNDL TENVRVGIPV RQTFPQMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22207267464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070559.10.0two-component response regulator ORR21
SwissprotA2XE311e-161ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A4D9B0A90.0A0A4D9B0A9_SALSN; Two-component response regulator ARR-B family
STRINGMigut.E00489.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2