PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 26780.8 Da PI: 6.5822 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_011070527.1 90 FSCNYCRRKFYSSQALGGHQNAH 112 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-6 | 88 | 117 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMPPNFNIES EDESEVSSQV ASNQEVSPVH SKESNNHSSC LEDSPGHHND TMPVILDLTL 60 GINGCDAEPK GSAETAGRVA EHPPPASRVF SCNYCRRKFY SSQALGGHQN AHKRERTLAK 120 RAMRMGMFSD RYASLASLPL HGSAFRSLGI EAHSSVHQQI VQSPGRPLHG IRGGARFVEQ 180 GYFGLPVYMD QYDEAELSWP GSFRQIEGLQ GNPGLDSGQR PDINFIATAP PARKDSSLPD 240 LNLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070525.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_011070527.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_011070528.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_011070529.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_011070530.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_011070531.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 1e-44 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2G9H1Y7 | 1e-125 | A0A2G9H1Y7_9LAMI; Uncharacterized protein | ||||
STRING | XP_009768278.1 | 1e-106 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 8e-47 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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