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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_011070518.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 281aa MW: 31204.8 Da PI: 10.1112 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011070518.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 333.7 | 4.7e-102 | 1 | 281 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalaernkalverdnkl 81
md+d+ rn+gyyep lk +lglqlmss+a+rd+k+ r++ + + + ++a+++rd m++ rd+++++ ++k+
XP_011070518.1 1 MDEDSL--RNWGYYEPP--LKGHLGLQLMSSVADRDTKPflsgRDNPV-MVSANGAFHPRDcmvteppvthMDY-VRDSWINH--------REKF 81
788855..9********..**********************9776666.99***********************.9******9........7899 PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
l++ + + p + + + + +s+ ++++p++++++ + +e+ + +++ kkrq a++pk++k kk++k ++++k+
XP_011070518.1 82 LHMFPGN-------PYNPVLAEPSGTHHSMTMVHQPDTTKETRP----------SMEDPNVKKEGGGPAKKRQAAATPKTPKGKKPRK-GPAPKE 158
9999933.......333333444445555666555544444333..........3334444455566778899999**********99.788988 PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+ +++ +r+k+ kk++++v+ng+++D++++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+Lek
XP_011070518.1 159 NGNPSV--QRAKTAKKNVEVVINGIDMDITGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEK 251
888887..79************************************************************************************* PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LaaeGy+++np+DL+++WAkHGtnkfv ir
XP_011070518.1 252 LAAEGYNFANPIDLRTYWAKHGTNKFVIIR 281
****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDEDSLRNWG YYEPPLKGHL GLQLMSSVAD RDTKPFLSGR DNPVMVSANG AFHPRDCMVT 60
EPPVTHMDYV RDSWINHREK FLHMFPGNPY NPVLAEPSGT HHSMTMVHQP DTTKETRPSM 120
EDPNVKKEGG GPAKKRQAAA TPKTPKGKKP RKGPAPKENG NPSVQRAKTA KKNVEVVING 180
IDMDITGIPI PVCSCTGTPQ QCYRWGCGGW QSACCTTTIS MYPLPMSTKR RGARIAGRKM 240
SQGAFKKVLE KLAAEGYNFA NPIDLRTYWA KHGTNKFVII R
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
