PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 295aa    MW: 31566.1 Da    PI: 7.8942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.8e-111154445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d+l+ +a++ ++ +   +W++Ia+ ++ g++ +++k+++ 
   XP_011070471.1 11 WSREQDKLFEKAIATYPEDssdRWEKIAADVP-GKSVEEVKHHYE 54
                     ********************************.**********96 PP

2Myb_DNA-binding422.1e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_011070471.1 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.514661IPR017884SANT domain
SMARTSM007171.2E-9759IPR001005SANT/Myb domain
SuperFamilySSF466893.93E-12965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-5957IPR009057Homeodomain-like
PfamPF002497.1E-101154IPR001005SANT/Myb domain
CDDcd001672.07E-101157No hitNo description
PROSITE profilePS5129417.581113170IPR017930Myb domain
SuperFamilySSF466891.27E-16116171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17118168IPR006447Myb domain, plants
SMARTSM007173.2E-10118168IPR001005SANT/Myb domain
CDDcd001678.38E-10121166No hitNo description
PfamPF002492.7E-11121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPADESSSSM WSREQDKLFE KAIATYPEDS SDRWEKIAAD VPGKSVEEVK HHYELLVDDV  60
NRIESGFVQV PCYNSSSDGS TSHAGDEVTG RKGGNFGHLN SESNHGGKSS RSDQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNSG DVSVPQGPIT GQTNGPAVAG PSGKSNKSLP QTPVAAPGVA MYGPPTIGQP  240
IGGPLVSAVG TPVNLPPPPH LAYGVGAPLP GSVVPGAPLN MGPMTYPVPH TSAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070471.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.10.0transcription factor SRM1
RefseqXP_011070472.10.0transcription factor SRM1
RefseqXP_020547442.10.0transcription factor SRM1
RefseqXP_020547443.10.0transcription factor SRM1
SwissprotQ9FNN61e-127SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068VFI41e-180A0A068VFI4_COFCA; Uncharacterized protein
STRINGXP_004513249.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-124MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]