PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070363.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 302aa MW: 33057.7 Da PI: 8.1169

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.7e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss XP_011070363.1 35 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	27	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-34	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDTAAQWPQD IVVKPMDEII TCSKPSVERK VRPQKEQALN CPRCNSTNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTEGGSLR NIPVGGGSRK NKRSSSTTIN NNTSISLSSS SSNSSKKLPD 120 LVPQQNPNKI QAVVETSQDL NLGFSAHHHD FKALTEMIQV PNFDSSTKLE LQNPSSSSSA 180 NSLELLTGLP TATTTTRGLS SSFMAPLLPP VITTTDLNTV YSSGFPNLPD FKPSLNFSLD 240 GLGSNYGSFQ GLQESNGKLL FPFEDLKQVS SNTSTDAEHN RDHQQGADST GYWSGVMGGG 300 SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070363.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ030332	5e-54	KJ030332.1 Sesamum indicum clone TilSSR_1533 microsatellite sesame_1533 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070363.1	0.0	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	1e-61	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A068UV02	1e-106	A0A068UV02_COFCA; Uncharacterized protein
STRING	EOY23946	1e-105	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-49	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]