PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070362.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 301aa    MW: 32988.3 Da    PI: 9.388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+t Ed ll ++++q+G g+W++ +++ g+ R++k+c++rw +yl
   XP_011070362.1 14 RGPWSTKEDTLLSNYIQQHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding49.78.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_011070362.1  67 RGNISEDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.05961IPR017930Myb domain
SuperFamilySSF466893.4E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-221568IPR009057Homeodomain-like
CDDcd001672.54E-91661No hitNo description
PROSITE profilePS5129424.58462116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002494.1E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2469117IPR009057Homeodomain-like
CDDcd001674.15E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRSPCCSKV GLRRGPWSTK EDTLLSNYIQ QHGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SEDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKSAG  120
INPKPHKDLP KPPKVKKSEG GAAGKKQRKQ KKAVVAADNE KISNQDGSKL GGGGGGEEPP  180
ASKSSEEQVN NPPKTKVYLP KPIRVSSVFS RTSSYDSLAS GTSSSDGGEA AEKAVEVVSY  240
VPVEWPPLFE LEDTNYGVCG GGEEDDFLGG GYILPVLHQS DSISSDVNML EKVYDEYLQL  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.10.0transcription repressor MYB5-like
SwissprotQ388502e-67MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0K1SB561e-142A0A0K1SB56_REHGL; R2R3-MYB protein
STRINGMigut.O00736.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-65myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]