PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070333.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 356aa MW: 39458.8 Da PI: 7.9564

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	183	236	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_011070333.1 183 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 236 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.58E-15	180	237	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	181	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	183	236	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-7	184	235	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSSWRSSHE DEMDLGFWKR ALDSRNSFSS MAKPLNFPNP 60 TRVSDPINSS VSVSSSTHFH HLLHGASAAR FLHSFQQTHQ PPHLLHQSLP EEVNFLRPIR 120 GIPVYQNTPS FPFAAHLDAS VQSSSAAANH INTSSSAPTY QSQGLMRSRF LSRFPGKRSM 180 RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKST 240 DRAAASSGQS DAFENGSSGD TSDDFLFDIQ NSHKSEVPSQ HGAQINMDNA KEYHALWSNS 300 SSMEAWLHSS PNDCQGNTKS LQDMEPKCLS SDVSSSSISE TSPKKPNLEF TLGRPQ

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSSWRSSHE DEMDLGFWKR ALDSRNSFSS MAKPLNFPNP  60
TRVSDPINSS VSVSSSTHFH HLLHGASAAR FLHSFQQTHQ PPHLLHQSLP EEVNFLRPIR  120
GIPVYQNTPS FPFAAHLDAS VQSSSAAANH INTSSSAPTY QSQGLMRSRF LSRFPGKRSM  180
RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKST  240
DRAAASSGQS DAFENGSSGD TSDDFLFDIQ NSHKSEVPSQ HGAQINMDNA KEYHALWSNS  300
SSMEAWLHSS PNDCQGNTKS LQDMEPKCLS SDVSSSSISE TSPKKPNLEF TLGRPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	184	238	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070333.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070332.1	0.0	probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	3e-89	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2G9G9L1	1e-164	A0A2G9G9L1_9LAMI; Uncharacterized protein
STRING	VIT_02s0012g01940.t01	1e-146	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-76	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]