PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070307.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 495aa    MW: 54237.7 Da    PI: 4.5361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_011070307.1  10 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDSAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 95 
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_011070307.1  96 ISRRKP 101
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-40494IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-36599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-64699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MPAANAPPPF LVKTYDMVDD PSTDKIVSWS PTNNSFVVWD SAEFARDLLP KYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKSISRRK PAHGQPQHQQ QPNGQSSAVG  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQSTDG QLQAMVQRLQ GMEQRQQQMM  180
SFLAKAVNSP GFLAQFMQQP SDGSRRISEA NKKRRLKQDG VSDDDSVTPS DGQIVKYQPL  240
MNEAAKAMLR QIMKLDSSPR LENFENASDN FLIGDGSSSS NALDHGNSSN RVSGVTLQEV  300
TPTSAPSFVP SGSAITGCTS AAICDIQSPS IGAAPAESVS NQFPGGSPLL GAQAVPPITL  360
PPTDAIIPEL SQMVPESNVD IIGSETETGI FMDPSSLAGD KIPLEIGGFS PDPQMEWDST  420
LLDEIPELPG VGDPFWEKFL QSPPPVEAEM DSTVTDDLPE GNETKATLEN GWDKSQHMAK  480
LTEQMELLSS DAKKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2929918129Heat shock factor protein 1
5d5v_B3e-2929918129Heat shock factor protein 1
5d5v_D3e-2929918129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210217NKKRRLKQ
2211216KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070307.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2G9HZ860.0A0A2G9HZ86_9LAMI; Heat shock transcription factor
STRINGXP_009619930.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-140heat shock factor 3
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]