PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070264.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 548aa    MW: 60792 Da    PI: 6.8295
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_011070264.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.9E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-11445No hitNo description
CDDcd002021.10E-16654No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.2E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.4E-12283380IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGKHGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDEFEDY  60
KVSKVKSISI KNKEGKVLKR KYDNDTTEFG GGPSDYSQGF RKGFDEDTSN RSSSGSAISN  120
SESCAQYGSA DASDLTGPSQ PTVWDTMVPS RKRTCVTRPK PSPVEKLTKD LYTIWHEQQS  180
SCLSASSEEE LLLESDKPIG SVEFGHGSVL IRHPSSIARE EESEASSLSI DHKRQSLNSR  240
LVAFPGLIED KSANLSSQGI DKIKRPANPG IEQQRIRRDK DQLEKLQIMA HHNSPLCYID  300
LQDVLNFDNF ASHLTNEERQ QLLKLLPSVD TLEAPDRGSV SISNIRSMFD SPQFKENLLS  360
FQKLLAAGLF DNSLSDLKIE DCKFLKKFVL CNLTKSKWVE QYKAFKESKG KNIMNESEVA  420
GESNTLATDS SLSVKKPREG LHRKLSGDNA TMGSPRRIIM TPNYDQKELI DKGCSFFSPK  480
RLFSSHNDDS SQVLDSTHFA DESSEQDLLL DVPSNGSFPQ AELLLPSSSF GAQASTSSSS  540
VYPNFVRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070264.10.0GATA transcription factor 26
TrEMBLA0A2Z7CXJ90.0A0A2Z7CXJ9_9LAMI; GATA transcription factor 26-like (Fragment)
STRINGXP_009772103.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-115GATA transcription factor 26