PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070153.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 495aa    MW: 56477.5 Da    PI: 6.9614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-152079155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_011070153.1 20 SIYRGVTRHRWTGRYEAHLWDkNCWNEaqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 79
                    57*******************999966655446*************************98 PP
2AP251.62.4e-16122173155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_011070153.1 122 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 173
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.76E-112089No hitNo description
SuperFamilySSF541716.34E-172089IPR016177DNA-binding domain
PfamPF008472.2E-112079IPR001471AP2/ERF domain
PROSITE profilePS5103220.312187IPR001471AP2/ERF domain
SMARTSM003801.3E-262193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-162188IPR001471AP2/ERF domain
PRINTSPR003677.1E-62233IPR001471AP2/ERF domain
CDDcd000186.23E-24122183No hitNo description
PfamPF008477.2E-12122173IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17122183IPR016177DNA-binding domain
SMARTSM003804.6E-25123187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17123182IPR001471AP2/ERF domain
PROSITE profilePS5103218.189123181IPR001471AP2/ERF domain
PRINTSPR003677.1E-6163183IPR001471AP2/ERF domain
PfamPF142233.1E-16367495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MKAKRTRKTI PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD KNCWNEAQNK KGRQVYLGAY  60
DDEEAAAHAY DLAALKYWGQ DTILNFPLST YQKELTEMEG QSREEYIGSL RRKSSGFSRG  120
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA AIAYDMAAIE YRGLNAVTNF  180
DLSRYIKWLR PNYSNPNKTN IDVEMNSAPS STNDSGSSAS IHRLQPPSET SNATLSQPRP  240
ATATSALGLL LQSSKFKEMM EMTLAAECPS TPQESDPPQS SIPEDIKTYF ESNEFCAYNV  300
DQGDDIFGEL NSFMQPMVQF DSMLNGEDLS PSETLVEIST LAITAAVIPA EGTTTKSEDE  360
TKLKYDRDNK TVRGHLLNYM NNSLFDLFVN YKSAKEIWIT MEARYGGDAA GRKKYVVGKW  420
LQFQMVGEKP IMDQIHGYEN LVTEVLSEGM KMCEILQANV LLEKFPPTWS EYRNHLKHKK  480
RDLTLQELIS HMRTE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-113AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G9HEL80.0A0A2G9HEL8_9LAMI; Uncharacterized protein
STRINGXP_009793520.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-111ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]