PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070146.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 397aa    MW: 44707.1 Da    PI: 6.5217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.2e-17138184148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT  Ed +lv++v+++G + W+ +a+ m  gR +kqc++rw+++l
   XP_011070146.1 138 KGQWTDNEDSKLVKLVTKYGCRKWAVVAKQMV-GRIGKQCRERWHNHL 184
                      799*****************************.*************97 PP
2Myb_DNA-binding54.42.9e-17194233445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      WT+eE++l+++a+++ G++ W+ Ia+ ++ gRt++++k++w+
   XP_011070146.1 194 WTEEEEKLIIEAHELVGNK-WAEIAKFVP-GRTENSIKNHWN 233
                      *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.363133188IPR017930Myb domain
SuperFamilySSF466891.42E-29135232IPR009057Homeodomain-like
SMARTSM007172.4E-12137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-21137184IPR009057Homeodomain-like
PfamPF002494.9E-15138184IPR001005SANT/Myb domain
CDDcd001675.76E-13141184No hitNo description
Gene3DG3DSA:1.10.10.601.6E-19185238IPR009057Homeodomain-like
PROSITE profilePS5129421.387189240IPR017930Myb domain
SMARTSM007171.0E-15190238IPR001005SANT/Myb domain
PfamPF002492.2E-16193233IPR001005SANT/Myb domain
CDDcd001674.30E-14194236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MRSILVAPFQ PSLLMEVGGE NSLYGSFQSH SNSWLEPISP PFTAMDSVLW AQNNLSHQQL  60
LNTVVNHPPP FFYPNAYSYF PTGGGFPDFT TQVDTGLVRG ILLLDLNSNS YVVNSTLDES  120
LNGVDNTETD GSTDNRVKGQ WTDNEDSKLV KLVTKYGCRK WAVVAKQMVG RIGKQCRERW  180
HNHLRPNIKK DQLWTEEEEK LIIEAHELVG NKWAEIAKFV PGRTENSIKN HWNATKRKQT  240
SKRRLKKPEK LNGITLSTVL EDYIKKKYFN NGSTSTNPNP GPTVAAPNNP ASTTAVVVPG  300
NQSVQDNSSP PLISTPDDHD DESLAYMTFD QEAINEEMDF MKNLFGNNNY SNLNNSQNGN  360
FSVPTQTFEA QLPVENMGNI GFFGFFLYRL VGFFRRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-451372393104C-Myb DNA-Binding Domain
1msf_C7e-451372393104C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070146.10.0transcription factor MYB98-like
TrEMBLA0A2G9GCX47e-96A0A2G9GCX4_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.C00491.1.p3e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-47myb domain protein 119