PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070112.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 734aa MW: 80537 Da PI: 5.9643

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	284.7	2.7e-87	373	732	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++++++Ae +++g++++aq +Larl++ +p g+p+ R a+y++eAL+ + ++ ++++p++ ++ + ++ a+k+fsevsP+++f ++t XP_011070112.1 373 DQVYKAAESMQAGNFSNAQGILARLNHVLAPIGKPFLRSAFYVKEALELAFMI--PSQVASVPSRIPAPFDAMFKMGAYKVFSEVSPVIQFMNFT 465 57899****************************************987765..7777789999999999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledle 190 aNq Ilea+ +er+H iDfdi+ G++W ++lq+L +++g+ s++iT+++sp+++++ e++ ++e+L++fA+ +g++fe +v+ + + ++ + XP_011070112.1 466 ANQIILEALGDAERIHLIDFDIGFGAHWSSFLQELPLKNRGATSIKITAFASPSTHHSLEISLMHENLTQFANDIGLNFELEVVNIDsfDPNCSS 560 *********************************************************************************7772445688 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +++Lr ++ E++aVn+ + ++ + s+ ++ L l+k+lsPkv+v + +++++ +F +++l++l+yy al+ds++a +s++ +k+ XP_011070112.1 561 VSSLRSSESEVIAVNFPVWSFTSY------LSALPSYLCLMKKLSPKVLVSLGRGCERGDLPFSHHILQTLQYYEALLDSVDAA-NVKSDASNKI 648 ****************888887......334667*****************************************666.5699** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E++l++++i++ v + + Wr+ + ++GF+p+++s+++++qa+++++++++ g++ e +++sl l+Wk+ +LvsvSaW XP_011070112.1 649 EKFLFQPRIESTVLGRLVH----PDIIPPWRNLFASVGFSPASISSFTETQAECVVKRMQVSGFHAERRQASLSLYWKHSELVSVSAW 732 **********99998....999************************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.588	345	713	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-85	373	732	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MMIGMQYNSN KFQARGDVGG FASSIFAASP YPLQTICKKD GSFSINEPIS VLDTRSPSPS 60 TSTSTFSSFN NTSQRGNMVV NEPTAAAGGK AEWVADRQGL LHNAGLELSH GVYEDPNLEL 120 QDWENLSESS GKQNEILKLI LQAGNQNEVQ GVLGFSAIDK SCEFPGGSAI PPVDNAFLSY 180 NTSALGLSGS GFSLNDHKVK TDLDSNSLLV DNNGNDALQS MASYIVFQQE LETLDQKVGI 240 FNPQGGLNPV PVRNAANQNL NPLLFGTQHE QQNQFYSLLT HQNVGSVASN LGSLNSKVPS 300 LDPGHQFLPS KQQHLAQMLQ PPVAPFHRPD IIPQHRLQEM PVLVPKPLAT RGCNEQMGVN 360 LQHQEQQQQI VYDQVYKAAE SMQAGNFSNA QGILARLNHV LAPIGKPFLR SAFYVKEALE 420 LAFMIPSQVA SVPSRIPAPF DAMFKMGAYK VFSEVSPVIQ FMNFTANQII LEALGDAERI 480 HLIDFDIGFG AHWSSFLQEL PLKNRGATSI KITAFASPST HHSLEISLMH ENLTQFANDI 540 GLNFELEVVN IDSFDPNCSS VSSLRSSESE VIAVNFPVWS FTSYLSALPS YLCLMKKLSP 600 KVLVSLGRGC ERGDLPFSHH ILQTLQYYEA LLDSVDAANV KSDASNKIEK FLFQPRIEST 660 VLGRLVHPDI IPPWRNLFAS VGFSPASISS FTETQAECVV KRMQVSGFHA ERRQASLSLY 720 WKHSELVSVS AWNC

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MMIGMQYNSN KFQARGDVGG FASSIFAASP YPLQTICKKD GSFSINEPIS VLDTRSPSPS  60
TSTSTFSSFN NTSQRGNMVV NEPTAAAGGK AEWVADRQGL LHNAGLELSH GVYEDPNLEL  120
QDWENLSESS GKQNEILKLI LQAGNQNEVQ GVLGFSAIDK SCEFPGGSAI PPVDNAFLSY  180
NTSALGLSGS GFSLNDHKVK TDLDSNSLLV DNNGNDALQS MASYIVFQQE LETLDQKVGI  240
FNPQGGLNPV PVRNAANQNL NPLLFGTQHE QQNQFYSLLT HQNVGSVASN LGSLNSKVPS  300
LDPGHQFLPS KQQHLAQMLQ PPVAPFHRPD IIPQHRLQEM PVLVPKPLAT RGCNEQMGVN  360
LQHQEQQQQI VYDQVYKAAE SMQAGNFSNA QGILARLNHV LAPIGKPFLR SAFYVKEALE  420
LAFMIPSQVA SVPSRIPAPF DAMFKMGAYK VFSEVSPVIQ FMNFTANQII LEALGDAERI  480
HLIDFDIGFG AHWSSFLQEL PLKNRGATSI KITAFASPST HHSLEISLMH ENLTQFANDI  540
GLNFELEVVN IDSFDPNCSS VSSLRSSESE VIAVNFPVWS FTSYLSALPS YLCLMKKLSP  600
KVLVSLGRGC ERGDLPFSHH ILQTLQYYEA LLDSVDAANV KSDASNKIEK FLFQPRIEST  660
VLGRLVHPDI IPPWRNLFAS VGFSPASISS FTETQAECVV KRMQVSGFHA ERRQASLSLY  720
WKHSELVSVS AWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-28	359	733	7	379	Protein SCARECROW
5b3h_A	7e-28	359	733	6	378	Protein SCARECROW
5b3h_D	7e-28	359	733	6	378	Protein SCARECROW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070112.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070112.1	0.0	scarecrow-like protein 22 isoform X1
TrEMBL	A0A2Z7CJJ4	0.0	A0A2Z7CJJ4_9LAMI; Scarecrow-like protein 22

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-93	GRAS family protein