PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070088.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 308aa    MW: 33135.9 Da    PI: 6.9162
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-30101154155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_011070088.1 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05998157IPR017930Myb domain
SuperFamilySSF466895.91E-2098158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30100159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24102154IPR006447Myb domain, plants
PfamPF002491.2E-7104153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MREEDSNWFS KWEDELPPPE ELMPLSQSLI TPDLALAFNI PSAHHQTPPP PPSHPPQSTA  60
LSSQPNSSAE FDSPELSGAG GGGGGGSGAA GSDEPARTLK RPRLVWTPQL HKRFVDAVAH  120
LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GISNNGGAGN NSPAALSASG  180
MDPATDHLFA TSPVPAHFLH PGRPNSEHFL PFVPVAAMQH HHQMPVVGPG QHHHQQLQQQ  240
FRHFGSSPPN GQFENPFMRQ SQPQVQRIGT PVHSSNGSGV PPAFGEDLES ATATNGRKVL  300
TLFPTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-32101157157Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17686SGAGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070088.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0641352e-56KJ064135.1 Sesamum indicum clone TilSSR_35336 microsatellite Sesame_35336 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070088.10.0transcription factor PCL1
SwissprotO222109e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2G9HQ471e-151A0A2G9HQ47_9LAMI; Uncharacterized protein
STRINGXP_009790047.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-80G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]