PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011069977.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 353aa    MW: 39659.5 Da    PI: 8.4995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011069977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-1781126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_011069977.1  81 RGHWRPHEDTKLKELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 126
                      899*****************************.***********996 PP
2Myb_DNA-binding57.23.7e-18133176146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_011069977.1 133 RRAFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 176
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.12776127IPR017930Myb domain
SMARTSM007174.9E-1480129IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2881174IPR009057Homeodomain-like
PfamPF002491.5E-1581126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2682134IPR009057Homeodomain-like
CDDcd001675.68E-1384125No hitNo description
PROSITE profilePS5129427.255128182IPR017930Myb domain
SMARTSM007172.8E-15132180IPR001005SANT/Myb domain
PfamPF002491.3E-14133175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20135181IPR009057Homeodomain-like
CDDcd001671.26E-7144175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNLQNLMNTA PNGVQEMSFT APDPAPQLRL GCFHERKGSP RIGFDHHCFN TQNNLKKPWA  60
FQTVEDGELG RKNGHTKLCA RGHWRPHEDT KLKELVAQFG PQNWNLIAEK LEGRSGKSCR  120
LRWFNQLDPR INRRAFSEEE EERLLAAHKM YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR  180
KHREQNSVYR RRNNNKAAGF SVMDMNLQIP NACSESTTVS SNNNNNNVDH ESAASTCTDL  240
SLTPSSLKPP HFFTRFSPAH HHINLMNSDI IGMEGGKNMM LILGRSNDEL YGKGPGPEAI  300
AANVDDHQSG YSDSNSEVSA SESVANNRAN LYMCGENEKG KMAFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32811817107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011069977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0694824e-58KJ069482.1 Sesamum indicum clone TilSSR_40683 microsatellite Sesame_40683 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069977.10.0transcription factor MYB56
TrEMBLA0A059PRU61e-126A0A059PRU6_SALMI; MYB-related transcription factor
STRINGXP_009587330.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-71myb domain protein 105