PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011069761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 326aa MW: 37234.1 Da PI: 5.4643 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ +s XP_011069761.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSIFS 58 68*******************************************98776 PP | |||||||
2 | K-box | 17.2 | 2.1e-07 | 106 | 174 | 5 | 73 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 +++ ++++ e+ qqe+ k k ++e +++++R + + e +sl e + eq Le+ lk++R +K+ +l XP_011069761.1 106 TSSPgMNDSQVEEIQQEMLKCKCQLEDMEKKLRIYEVDPSEIISLCEAEYREQVLEENLKQVRVRKH-VL 174 444458999********************************************************96.44 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.338 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-30 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.72E-37 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSIFSGN 60 RSIEEIMARY VNLPEHERGR LQNQEYLQRA LGKLKSEADR NYQAATSSPG MNDSQVEEIQ 120 QEMLKCKCQL EDMEKKLRIY EVDPSEIISL CEAEYREQVL EENLKQVRVR KHVLQDQYNS 180 PAAQTSQVMN LGSEATDINV LAARNPDNVL DWLPQRDPQV QILNFLDSNG LLPLRDQPQR 240 IDGILQQSLT LVHAPSVHVH NHLSPSRSME DDAQRPEFGQ VIDVNLSPWA ELYPAGNDPF 300 PTAQPRERAL LEQFLSQLTP VNQDHI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011069761.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069761.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
TrEMBL | A0A2G9HCX4 | 0.0 | A0A2G9HCX4_9LAMI; MADS box transcription factor | ||||
STRING | Migut.C00517.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6183 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22130.1 | 5e-54 | AGAMOUS-like 104 |