PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0539s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 293aa    MW: 32259 Da    PI: 7.1
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0539s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.24.9e-42131131101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rrkC +dC+l+pyfpa+qp++fanvhklFG+sn l++lk++++++red+++s++yeA++r +dPv+G++gvi  lq+q+ +
  Sphfalx0539s0001.1.p  13 ACAACKYQRRKCMPDCPLSPYFPADQPRRFANVHKLFGVSNTLRILKQVDPSKREDTVKSIAYEADMRDKDPVHGCLGVIAMLQNQVLN 101
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           lk ela ++++l
  Sphfalx0539s0001.1.p 102 LKDELAIAHDQL 113
                           *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.73712113IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-4013110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTGSSVGGTN TTACAACKYQ RRKCMPDCPL SPYFPADQPR RFANVHKLFG VSNTLRILKQ  60
VDPSKREDTV KSIAYEADMR DKDPVHGCLG VIAMLQNQVL NLKDELAIAH DQLYLLQQQQ  120
QNFHSQQSQL QLHALQGTSF ATLKVYNLKY RYADEEAADD SSFSLVQRQA LAMQIKADEH  180
ELQRAAPPGS SYFGGVAGVS SGQFDDSPVS HHQMHHQAAL VEEEQAASMH HRTRTAVLIP  240
DGPVNLAVTS DHNVDLRRAS NYSSGATAGH INPDHAQWRS SPGVYLTLTN QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-381411312111LOB family transfactor Ramosa2.1
5ly0_B6e-381411312111LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382351.17e-74LOB domain-containing protein 4-like
TrEMBLA0A2K1K7882e-72A0A2K1K788_PHYPA; Uncharacterized protein
STRINGPP1S184_36V6.13e-73(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-38LOB domain-containing protein 25