PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0465s0001.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 835aa MW: 89107.4 Da PI: 6.6825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0465s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.6e-10	648	695	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + sk Ka +L + ++Y++ Lq Sphfalx0465s0001.2.p 648 SHSLAERVRREKINDRMKYLQDLVPGC----SKVTGKAVMLDEIINYVQLLQ 695 8***********************9....556*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.65E-11	642	699	No hit	No description
SuperFamily	SSF47459	9.16E-17	642	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	644	707	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.866	644	694	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	648	695	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-10	650	700	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MTYYNTETSA LKSRFSSRQD MPMKNNHFSS SKIAGMQQGY YMRNYPSPAA THADADSVDL 60 HLLAAAHNLL MQKNYNLQQA SSWSSSDAAA AVLEHRSWRR QQQQLGSSMQ ITSRDDGEYN 120 HWQQVQQLVD RTKAGCLLPY AEGGSTMSSL LAVSTSSSSP STAATQLRHS SCGSRPGAHH 180 HMIRPEAAPA GTMSTMMNIR DDQQLLGHRI NGCNNVDNRS GAAVPFSTGS PSKISHQSAA 240 AADGHLLHME KLLQLHHAGS SSCWSTDLRP RGGDLTLIDP SSKLAGLAGD VELVKSSTHC 300 GLAQLSSRDG PALNAVDQQA SSFGSGGGGD HYPSSQAGHD QQPVSFLTDS PESRSARRSG 360 SEGGQQAADH DQIISYGCNL SRTSSSTVAG VKIEGVNSGG LDVTSWANST TVAAQQLQVR 420 VISDDESKER LPCGTGSSKL PASLEAFEGE RDKSSAGADE AAAPAGCENA DPAGIGIYAI 480 SSCCRGAATS TVVPEKKRKN DVAVTAPADD SARDRGSSSL CQESTIQQQL VENDGSTKPK 540 RLKLGNGAAA PMKTGTQDQE ALQRRHIRPP AKGEAGSSCG NEVDNSDNDS ISQGGGIMSM 600 QQQEEIMQND PARRKSLHQP LAAAAADLSA CKQDYIHVRA RRGQATDSHS LAERVRREKI 660 NDRMKYLQDL VPGCSKVTGK AVMLDEIINY VQLLQRQVEI LSMRLASVDH SDSLFSQSHA 720 NLPQQPPTHG FQPASVFGTN CSALDFRQSA LNGNLERGLS HDDSVSTVTT QLFQESCISS 780 HVDAAAAVTA IEAHDHVIQR LAKYSPDGDV AMHWTNFHDI TRPQLLSLTS FTEG*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MTYYNTETSA LKSRFSSRQD MPMKNNHFSS SKIAGMQQGY YMRNYPSPAA THADADSVDL  60
HLLAAAHNLL MQKNYNLQQA SSWSSSDAAA AVLEHRSWRR QQQQLGSSMQ ITSRDDGEYN  120
HWQQVQQLVD RTKAGCLLPY AEGGSTMSSL LAVSTSSSSP STAATQLRHS SCGSRPGAHH  180
HMIRPEAAPA GTMSTMMNIR DDQQLLGHRI NGCNNVDNRS GAAVPFSTGS PSKISHQSAA  240
AADGHLLHME KLLQLHHAGS SSCWSTDLRP RGGDLTLIDP SSKLAGLAGD VELVKSSTHC  300
GLAQLSSRDG PALNAVDQQA SSFGSGGGGD HYPSSQAGHD QQPVSFLTDS PESRSARRSG  360
SEGGQQAADH DQIISYGCNL SRTSSSTVAG VKIEGVNSGG LDVTSWANST TVAAQQLQVR  420
VISDDESKER LPCGTGSSKL PASLEAFEGE RDKSSAGADE AAAPAGCENA DPAGIGIYAI  480
SSCCRGAATS TVVPEKKRKN DVAVTAPADD SARDRGSSSL CQESTIQQQL VENDGSTKPK  540
RLKLGNGAAA PMKTGTQDQE ALQRRHIRPP AKGEAGSSCG NEVDNSDNDS ISQGGGIMSM  600
QQQEEIMQND PARRKSLHQP LAAAAADLSA CKQDYIHVRA RRGQATDSHS LAERVRREKI  660
NDRMKYLQDL VPGCSKVTGK AVMLDEIINY VQLLQRQVEI LSMRLASVDH SDSLFSQSHA  720
NLPQQPPTHG FQPASVFGTN CSALDFRQSA LNGNLERGLS HDDSVSTVTT QLFQESCISS  780
HVDAAAAVTA IEAHDHVIQR LAKYSPDGDV AMHWTNFHDI TRPQLLSLTS FTEG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-38	cryptochrome-interacting basic-helix-loop-helix 1

Link Out ? help Back to Top
Phytozome	Sphfalx0465s0001.2.p