PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0465s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 846aa MW: 89925.5 Da PI: 6.6589 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.8e-10 | 648 | 695 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + sk Ka +L + ++Y++ Lq Sphfalx0465s0001.1.p 648 SHSLAERVRREKINDRMKYLQDLVPGC----SKVTGKAVMLDEIINYVQLLQ 695 8*************************9....556***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.85E-11 | 642 | 699 | No hit | No description |
SuperFamily | SSF47459 | 9.29E-17 | 642 | 708 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 644 | 707 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.866 | 644 | 694 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-7 | 648 | 695 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 650 | 700 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MTYYNTETSA LKSRFSSRQD MPMKNNHFSS SKIAGMQQGY YMRNYPSPAA THADADSVDL 60 HLLAAAHNLL MQKNYNLQQA SSWSSSDAAA AVLEHRSWRR QQQQLGSSMQ ITSRDDGEYN 120 HWQQVQQLVD RTKAGCLLPY AEGGSTMSSL LAVSTSSSSP STAATQLRHS SCGSRPGAHH 180 HMIRPEAAPA GTMSTMMNIR DDQQLLGHRI NGCNNVDNRS GAAVPFSTGS PSKISHQSAA 240 AADGHLLHME KLLQLHHAGS SSCWSTDLRP RGGDLTLIDP SSKLAGLAGD VELVKSSTHC 300 GLAQLSSRDG PALNAVDQQA SSFGSGGGGD HYPSSQAGHD QQPVSFLTDS PESRSARRSG 360 SEGGQQAADH DQIISYGCNL SRTSSSTVAG VKIEGVNSGG LDVTSWANST TVAAQQLQVR 420 VISDDESKER LPCGTGSSKL PASLEAFEGE RDKSSAGADE AAAPAGCENA DPAGIGIYAI 480 SSCCRGAATS TVVPEKKRKN DVAVTAPADD SARDRGSSSL CQESTIQQQL VENDGSTKPK 540 RLKLGNGAAA PMKTGTQDQE ALQRRHIRPP AKGEAGSSCG NEVDNSDNDS ISQGGGIMSM 600 QQQEEIMQND PARRKSLHQP LAAAAADLSA CKQDYIHVRA RRGQATDSHS LAERVRREKI 660 NDRMKYLQDL VPGCSKVTGK AVMLDEIINY VQLLQRQVEI LSMRLASVDH SDSLFSQSHA 720 NLPQQPPTHG FQPASVFGTN CSALDFRQSA LNGNLERGLS HDDSVSTVTT QLFQESCISS 780 HVDAAAAVTA IEAHDHVIQR SMSVSDGSDL QSIVQMGMLQ CTGPTSMISP GLNCCHLPAS 840 LKVEL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-38 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0465s0001.1.p |