PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0457s0002.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 641aa MW: 66836.5 Da PI: 6.5155

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0457s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	184	243	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k +cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk++ Sphfalx0457s0002.1.p 184 PDKLAPCPRCESVDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHV 243 78899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	181	241	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	186	242	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	188	242	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	190	226	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MSKLRKWLMK EERSPGTPVN VLDPAIKLFG TTIGVTGGGV SSSADAADAG EVITGSSPTT 60 SRQESPQCSQ ESRDAGGEAE DAAEEAGEEE EILQNNTQDH CTSAGSRAVD ELGSSLGNNR 120 AAAEEEKSLK SGKRDSDSTV TAVTGTETVA LAAEEISEGI SMELKEKGSG QEIVPQGKSP 180 LKKPDKLAPC PRCESVDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTLRN VPVGAGRRKN 240 KHVGLQARHV AVADGSVVSM VRPDSRETAQ QLLPSPGSIV STVKHPQIPG HCPTLPDSCS 300 GGSNITSFSQ DNRPSEGAVF LRHATGTMPP QPYPSSNPYV ASGGEISLME GFPASGKVHQ 360 KPAVDGSQNG GTGHTSEQPS EVDKKQVVNN CASSLPESVS TATKEAASTG GSMLVYPNLQ 420 PDVGGLYPKL PGQDAGDLPA GGTGGPFGFY NGAWPYGFNV RWNGAVPAVS PGVVGSGQVL 480 PGNGLATWSP PPNGVWTGAG VIPWASPIPG MPSLPWIVPP GWGGGWTVPM PWAAAAAQAA 540 ASTANGSVLP GTTMPVLGKH SREWPEGRRV DGALWAPKTL RIDDPKDAAR SSVWNALGMP 600 NPPESLLSGS KFKAFQLKAE TKVRAESQPQ QVKQSTGQQL *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MSKLRKWLMK EERSPGTPVN VLDPAIKLFG TTIGVTGGGV SSSADAADAG EVITGSSPTT  60
SRQESPQCSQ ESRDAGGEAE DAAEEAGEEE EILQNNTQDH CTSAGSRAVD ELGSSLGNNR  120
AAAEEEKSLK SGKRDSDSTV TAVTGTETVA LAAEEISEGI SMELKEKGSG QEIVPQGKSP  180
LKKPDKLAPC PRCESVDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTLRN VPVGAGRRKN  240
KHVGLQARHV AVADGSVVSM VRPDSRETAQ QLLPSPGSIV STVKHPQIPG HCPTLPDSCS  300
GGSNITSFSQ DNRPSEGAVF LRHATGTMPP QPYPSSNPYV ASGGEISLME GFPASGKVHQ  360
KPAVDGSQNG GTGHTSEQPS EVDKKQVVNN CASSLPESVS TATKEAASTG GSMLVYPNLQ  420
PDVGGLYPKL PGQDAGDLPA GGTGGPFGFY NGAWPYGFNV RWNGAVPAVS PGVVGSGQVL  480
PGNGLATWSP PPNGVWTGAG VIPWASPIPG MPSLPWIVPP GWGGGWTVPM PWAAAAAQAA  540
ASTANGSVLP GTTMPVLGKH SREWPEGRRV DGALWAPKTL RIDDPKDAAR SSVWNALGMP  600
NPPESLLSGS KFKAFQLKAE TKVRAESQPQ QVKQSTGQQL *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-37	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0457s0002.1.p