PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0444s0006.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 518aa MW: 58400.2 Da PI: 6.4267

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0444s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	3	25	1	22
EEETTTT.EEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirt 22 y+C+ Cg Fs+ s L +H+r+ Sphfalx0444s0006.1.p 3 YSCNRCGaLKFSSASALSNHQRS 25 99*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MEYSCNRCGA LKFSSASALS NHQRSIACFS SQRNLEHTCK RVKSTNPQAF ESAQGLQQEN 60 LQQEDQFDFD NLVSIPDYPN PPPYDSTFSL VHWIRHCRAT IGLSNKDINS LFEKVLFHPS 120 FKLEDVSVRS AAQIDRYEQT IFRTEDGWDQ YLIHVTEGDS GDRVMYHKDP LEALSSMFSS 180 PSLKEDFQIA PSNGVHQGVY STPNTSLWWL QMQNLINTQC PGAVIAPLIF YNDQTSLSND 240 GRVIGYPLVM SIANIACENR YLDEGHVLLA TLPIISSTEA SHERRLQVFH ECLDVVLKPL 300 KEASFKGLAL TDPHGDEHWV FPLLYAYVCD HPEGCKVTCT YDTNQCQHPC SLCMCPKQSL 360 REVEKKFDYR TENGMQALVM KMLASTKKDV DLLSKENSVH PVKCALWGFN GGETEWGNPY 420 KAIHVDMLHQ ADLGVFKTII DILRGIALAS INSKILSSLD QRLFHIKKHS RYPSFRIPGT 480 DKGGYFSSNA NYDAFEHWSV MQVLSIPHLV SILVGAF*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MEYSCNRCGA LKFSSASALS NHQRSIACFS SQRNLEHTCK RVKSTNPQAF ESAQGLQQEN  60
LQQEDQFDFD NLVSIPDYPN PPPYDSTFSL VHWIRHCRAT IGLSNKDINS LFEKVLFHPS  120
FKLEDVSVRS AAQIDRYEQT IFRTEDGWDQ YLIHVTEGDS GDRVMYHKDP LEALSSMFSS  180
PSLKEDFQIA PSNGVHQGVY STPNTSLWWL QMQNLINTQC PGAVIAPLIF YNDQTSLSND  240
GRVIGYPLVM SIANIACENR YLDEGHVLLA TLPIISSTEA SHERRLQVFH ECLDVVLKPL  300
KEASFKGLAL TDPHGDEHWV FPLLYAYVCD HPEGCKVTCT YDTNQCQHPC SLCMCPKQSL  360
REVEKKFDYR TENGMQALVM KMLASTKKDV DLLSKENSVH PVKCALWGFN GGETEWGNPY  420
KAIHVDMLHQ ADLGVFKTII DILRGIALAS INSKILSSLD QRLFHIKKHS RYPSFRIPGT  480
DKGGYFSSNA NYDAFEHWSV MQVLSIPHLV SILVGAF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Sphfalx0444s0006.1.p