PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0438s0004.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 589aa MW: 63857.5 Da PI: 9.7292

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0438s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	43.1	8.7e-14	502	556	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKY g++ pr +Y Ct gC ++k +e + + v +Yeg+Hnh Sphfalx0438s0004.1.p 502 DGYNWRKYNEIIPPGTTSPRVFYGCTNMGCIARK-IEEHS-PTGHVRHIYEGSHNHL 556 9******************************9.66666.46778889*****5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00890	0.00226	349	442	No hit	No description
PROSITE profile	PS50811	16.214	495	558	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.3E-11	498	558	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-13	499	558	IPR003657	WRKY domain
SMART	SM00774	3.0E-7	500	557	IPR003657	WRKY domain
Pfam	PF03106	6.2E-10	502	555	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MSRGLQSWKD GVQGRTGRIE IDILDRGIEI DISNSNGDGQ MELSSSILER NNLVSRQGGL 60 HQLAATIAAS ETNQVHVLIQ EAQQLYMHHL PAKKDIDRDS LSQSQATEQP LGTEDLAVEN 120 KNRSEFLSTV QNVPEKEDRI SPKCENRKCQ SIATNGKLFS GLPVWCAQHQ ATAMVAAMTT 180 TAAGMAKKRR VRGCMSMEVC GAHQDKPLRC TSHVGARPLK QPRVQTTSSN VSIEKDTQRG 240 SGGTEGTGIS DTPRVLPTTI PPAAGESVGA IGKQASRSSG VENGAGLSAP PQILPATVES 300 VAGEPAIAIW KETPRSSGRT IVAGLLTSPC LSPPTVAFVA GEPVQATGKD TRRSNGGTKV 360 VEPSGSPGFQ PATISSVSGE PIGVQKHESG VSYLVQSPPS GRFLSQKEMK ELEVEIKQLK 420 KEHDGLQQRM VSIEIEMARL QGVQKREIER HQIQNERAAK SCLQLKSQTT MQSLPLQRNI 480 AVQGSLQQGK ATACAILRPL IDGYNWRKYN EIIPPGTTSP RVFYGCTNMG CIARKIEEHS 540 PTGHVRHIYE GSHNHLQPRK AMALIRSCRK RKLSYRELEK GRLRVDGQ*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MSRGLQSWKD GVQGRTGRIE IDILDRGIEI DISNSNGDGQ MELSSSILER NNLVSRQGGL  60
HQLAATIAAS ETNQVHVLIQ EAQQLYMHHL PAKKDIDRDS LSQSQATEQP LGTEDLAVEN  120
KNRSEFLSTV QNVPEKEDRI SPKCENRKCQ SIATNGKLFS GLPVWCAQHQ ATAMVAAMTT  180
TAAGMAKKRR VRGCMSMEVC GAHQDKPLRC TSHVGARPLK QPRVQTTSSN VSIEKDTQRG  240
SGGTEGTGIS DTPRVLPTTI PPAAGESVGA IGKQASRSSG VENGAGLSAP PQILPATVES  300
VAGEPAIAIW KETPRSSGRT IVAGLLTSPC LSPPTVAFVA GEPVQATGKD TRRSNGGTKV  360
VEPSGSPGFQ PATISSVSGE PIGVQKHESG VSYLVQSPPS GRFLSQKEMK ELEVEIKQLK  420
KEHDGLQQRM VSIEIEMARL QGVQKREIER HQIQNERAAK SCLQLKSQTT MQSLPLQRNI  480
AVQGSLQQGK ATACAILRPL IDGYNWRKYN EIIPPGTTSP RVFYGCTNMG CIARKIEEHS  540
PTGHVRHIYE GSHNHLQPRK AMALIRSCRK RKLSYRELEK GRLRVDGQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	6e-13	WRKY DNA-binding protein 2

Link Out ? help Back to Top
Phytozome	Sphfalx0438s0004.1.p