PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0407s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 703aa    MW: 74206 Da    PI: 7.1967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0407s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31350406259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +DgynWrKYGqK+vkgse++rsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+geHnh 
  Sphfalx0407s0004.1.p 350 EDGYNWRKYGQKQVKGSEYTRSYYKCTQAHCPMKKKVERSH-DGQVTEIVYKGEHNHA 406
                           7****************************************.***************7 PP
2WRKY103.41.2e-32524582159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Sphfalx0407s0004.1.p 524 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDVKAVITTYEGKHNHD 582
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.86344408IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-27347408IPR003657WRKY domain
SuperFamilySSF1182907.45E-24347408IPR003657WRKY domain
SMARTSM007746.4E-33349407IPR003657WRKY domain
PfamPF031063.9E-24350405IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37509584IPR003657WRKY domain
SuperFamilySSF1182905.89E-29516584IPR003657WRKY domain
PROSITE profilePS5081138.193519584IPR003657WRKY domain
SMARTSM007741.3E-38524583IPR003657WRKY domain
PfamPF031061.9E-25525582IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MLRKPTPSRP QMTTAAATRV CYNPEGVVAY RGIESPVSSM VSGFLADQQE VEMDSRSFSH  60
LLAGAISSAS PASGDRADEQ GEALDSAATG SPRLGGEASS SVGGGGAGGS FADRLAARGA  120
ANTAGGGTAE GGGGGGSAPR PPSSGRARSL PPSRIPIPRP AGYLTIPPGL SPTTLFDSSP  180
VLLPTSQSEP SPTTGAFPLG VSTFFNTSSG FPKPIMAIDP SSKDKSTADQ GFVFKPVPQN  240
AMSRLAGRSI FGASQQQAHV LTEMHQAHVQ QVAPSSSALG ASAGLPLVHT TMPFSVPLDV  300
PSFQAAHVQA HVQQQQQQIA PDSEQNSQAS EQDHLLPPTS ITAFPERASE DGYNWRKYGQ  360
KQVKGSEYTR SYYKCTQAHC PMKKKVERSH DGQVTEIVYK GEHNHAKPQP TRRLALNGAA  420
GFVSNVKNEG GGVEQDVMDS SRASHLVSSL SFGATGAPEP LSPSTSDDEG QEGSKLSAED  480
GDDDEPDSKR RRKDKKVLEA VPTSSRTIRE PRVVVQTTSD VDILDDGYRW RKYGQKVVKG  540
NPHPRSYYKC TNVGCPVRKH VERASTDVKA VITTYEGKHN HDVPSARNSS NDTLLQTTTP  600
AVPAATSLQD QGSQFNHNLG QLLEDGSCKV EISAVDVDLG VRSGMGANGD MPVSTSLGHS  660
DFRDGRAVQG RDSFVHRATF AARPKQEQPE STSQTTLIPS CT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37350585878Probable WRKY transcription factor 4
2lex_A4e-37350585878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494RRRKDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368161.10.0WRKY transcription factor SUSIBA2-like isoform X3
TrEMBLA0A2K1L2S70.0A0A2K1L2S7_PHYPA; Uncharacterized protein
STRINGPP1S135_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-88WRKY DNA-binding protein 33