PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0377s0006.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 696aa    MW: 76540.9 Da    PI: 5.9204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0377s0006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.1e-12198297198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv +  d  ++g +vlpk+ +eeh   ++ ++++ ++l de g++W ++++++ ++++  y+++     +v++ +L+ gD+v F+++
  Sphfalx0377s0006.2.p 198 FEKVASITDCRSTGHFVLPKRKVEEHfpALSRPGGVWMKLLDEFGKEWAFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVYFSRI 285
                           778888889999999*************8888999******************9877777768887.7999****************88 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  +++l+++ ++
  Sphfalx0377s0006.2.p 286 E-PQGTLFMGYRK 297
                           7.77777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-18192300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-16196297IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-10197297No hitNo description
PROSITE profilePS508638.952198299IPR003340B3 DNA binding domain
SMARTSM010191.1E-7198298IPR003340B3 DNA binding domain
PfamPF023627.4E-9198297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKSTIRQLQK YIGELSGERN NAEQMLQGDS LTVAQAQAAW TSCISTPINV KCFTEEQRPE  60
ENGGSDLHAG GKGAAAAAAA ARRGSPKKSS SALATTASTC QFPGGTSLLV GCVLGKSSSR  120
TGKQQERGLL KWKLSDNKDK YLSTAPPSTL EPLAILSAGE AGGENQTVAS SISIDNPCVT  180
IQNPEPVTSP LSTMTLLFEK VASITDCRST GHFVLPKRKV EEHFPALSRP GGVWMKLLDE  240
FGKEWAFEFC FWHSKESRIY YFKKFYPYVQ STDLRGGDTV YFSRIEPQGT LFMGYRKQNS  300
VASKYDQAAA NPATSMNDPD YLPSSSEHGS GCVGDQKSAL LAPRNELRLY GADHVNSLDR  360
VFTKRKRRKE SPSFFAHGTN VIDQLAPGEA LVGEKAAGKL ETKSQVLQHM DSRTSGPLSS  420
KWKRLRDYAE EYIEWEEMHG LLQPLPGVLP TIVTIEGHDF EEYKEAPVLT KRTFFSSDLC  480
SWRRLSSDTF VPSPWICSNN IKDPERSHCN TPQELSDDKI EQLLGFPLEQ EAVIDSQEEE  540
HDDLPAEHFL DEQEYSDMAT PELTSLVLHE DDECVAREAL LSVKTSAPPV EESRRNSLTG  600
CINLSGNSRV EKNGFKYTPG SSWVPRLQQD CLREPCALSA RRSSSYIPSG AGKGHQLCAG  660
CEIFIGSAAQ ACKLCGTLTE YGARRRAQLV DELEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-2319729723123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363368KRKRRK
2364369RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KMY41e-123A0A2K1KMY4_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-46HSI2-like 1