PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0377s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | B3 | ||||||||
Protein Properties | Length: 709aa MW: 77963.5 Da PI: 5.922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.3e-12 | 198 | 297 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 f+kv + d ++g +vlpk+ +eeh ++ ++++ ++l de g++W ++++++ ++++ y+++ +v++ +L+ gD+v F+++ Sphfalx0377s0006.1.p 198 FEKVASITDCRSTGHFVLPKRKVEEHfpALSRPGGVWMKLLDEFGKEWAFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVYFSRI 285 778888889999999*************8888999******************9877777768887.7999****************88 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++l+++ ++ Sphfalx0377s0006.1.p 286 E-PQGTLFMGYRK 297 7.77777776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 192 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-16 | 196 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-10 | 197 | 297 | No hit | No description |
PROSITE profile | PS50863 | 8.952 | 198 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-9 | 198 | 297 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-7 | 198 | 298 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.972 | 480 | 530 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.0E-10 | 485 | 527 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MKSTIRQLQK YIGELSGERN NAEQMLQGDS LTVAQAQAAW TSCISTPINV KCFTEEQRPE 60 ENGGSDLHAG GKGAAAAAAA ARRGSPKKSS SALATTASTC QFPGGTSLLV GCVLGKSSSR 120 TGKQQERGLL KWKLSDNKDK YLSTAPPSTL EPLAILSAGE AGGENQTVAS SISIDNPCVT 180 IQNPEPVTSP LSTMTLLFEK VASITDCRST GHFVLPKRKV EEHFPALSRP GGVWMKLLDE 240 FGKEWAFEFC FWHSKESRIY YFKKFYPYVQ STDLRGGDTV YFSRIEPQGT LFMGYRKQNS 300 VASKYDQAAA NPATSMNDPD YLPSSSEHGS GCVGDQKSAL LAPRNELRLY GADHVNSLDR 360 VFTKRKRRKE SPSFFAHGTN VIDQLAPGEA LVGEKAAGKL ETKSQVLQHM DSRTSGPLSS 420 KWKRLRDYAE EYIEWEEMHG LLQPLPGVLP TIVTIEGHDF EEYKEAPVLT KRTFFSSDLC 480 RGGDKWVMCD NCGSWRRLSS DTFVPSPWIC SNNIKDPERS HCNTPQELSD DKIEQLLGFP 540 LEQEAVIDSQ EEEHDDLPAE HFLDEQEYSD MATPELTSLV LHEDDECVAR EALLSVKTSA 600 PPVEESRRNS LTGCINLSGN SRVEKNGFKY TPGSSWVPRL QQDCLREPCA LSARRSSSYI 660 PSGAGKGHQL CAGCEIFIGS AAQACKLCGT LTEYGARRRA QLVDELEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-23 | 197 | 297 | 23 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 363 | 368 | KRKRRK |
2 | 364 | 369 | RKRRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1KMY4 | 1e-131 | A0A2K1KMY4_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-53 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0377s0006.1.p |