PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0355s0002.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1285aa MW: 140359 Da PI: 6.5184

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0355s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	51	87	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +W+++E l++++ +++G++ Wk++a+ m +Rt +++ Sphfalx0355s0002.1.p 51 PWSEDELNLFYQGYRKYGKD-WKKVAANMH-KRTVEMVE 87 8***************99.*****.999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-10	47	96	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.045	47	98	IPR017884	SANT domain
SMART	SM00717	1.2E-7	48	96	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-8	51	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-6	51	92	IPR009057	Homeodomain-like
CDD	cd00167	6.50E-8	51	94	No hit	No description
Pfam	PF06584	4.3E-31	683	783	IPR033471	DIRP domain
SMART	SM01135	4.7E-55	683	784	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1285 aa Download sequence Send to blast
MASARRPRTF SRPAATKGAE GGGVTTDRED DGGGDRYKQR KRKLADMLGP PWSEDELNLF 60 YQGYRKYGKD WKKVAANMHK RTVEMVEALY NTNKAYLSLP EGAASVAGLI AMMTDHYNLL 120 DDSQSQNEDT SDEHEISDEP PYPTQLWRGR TGAGNVGLET SSMQSNGPVG TSVFSGSSPA 180 RKPRTNRSRA VGKRTSRFPV ESTVQMKLRH HVSPTNFPLQ DEEELESHVA AAHTLVSRRT 240 ASPSVSNTPS RRSLRQVMAQ QNGDSKETLL RTESDTLVKP ATTMTAKADI GSDGSEESKE 300 YDGATRASSS TCADKRVGQD GKNPAACEVR SRLKRPTSKL VELHNVDDKY QDAKDSYVNT 360 DAENELEEEE EGHRHGNGAD LVQVSKQEAL GQWQQHPLQA PERPKKRSRQ LFSGDSNSGL 420 DALATLAASS LSGMELDESL NAFADAAAAV EDNRGDADMA PENETSPNQR DAMDKTKGEQ 480 ANVKIELENV NLGGEGWEGD EKKDKGAVVV ADRQPLTSPE SQKRKKKTTI AKAKPLAPAE 540 DDEVSLKPHS KLKSAAGAKT VSSRPVLKPL IHGSETAAEE GDLTSQGKEA IMEAGEDRAI 600 EIDESLLPLK LRSKKKAVPE KFIAERVCSV TDLGRASLDQ DLPKIQPAFC PHTTPELGPS 660 NAKARVTHCL CTKVRQWCMC EWFYSAIDLP WFARNEFVEY LNHAGLGHVP RLARVEWGVI 720 RSSLGKPRRL SKRFLEEERE KLATYRESVR IHYHELRIGL RECLPADLAH PLTVGQKVIA 780 RHPKTREMHD GTILTVDRCR CRVQFDDPDL GVELVLDIDA MPIHQLENMP EVMRRCHVLV 840 DGGHYPLLQD AKDHKLRVAL SAGVAARAAL NEQLEWPACN VIPFSQIFLN DLSKRAQVDS 900 ADSIRSAKAA TNEAAAAAQK VGLSQPFGIS QLQARDADVR ALADLSRALD KKEALVAELR 960 QMNDEANVNC NGLRISEAFQ RQYATVVLQL KEANKQVATA LVQLRQRNKY QENVVPPWHR 1020 YSPQGVYVLG SSDSANTGEL GPLYSGPGLA EMADSAKEHA RLMVTTAVKA MDAVKDGEDA 1080 FQKLGCALEA LPKLAFAALQ TPSPCVDPVA KATVPLTGAC TSAILPQSLG QSSSSSEAEE 1140 TVDPNFTVTR SQDRMLKQVN DIGVKSLPTT LEAVANGLIQ HLDQAGFSSV NAEGASLLEL 1200 MTSCVATLFM LQTLSDGTYS QSGVNQTLDT AFLSLLPKSA QNHCIYKEIE QQLGIVKAQI 1260 TGHIPVRSTM PFGVDMSIPQ THTA*

Sequence ? help Back to Top

Protein Sequence Length: 1285 aa Download sequence Send to blast

MASARRPRTF SRPAATKGAE GGGVTTDRED DGGGDRYKQR KRKLADMLGP PWSEDELNLF  60
YQGYRKYGKD WKKVAANMHK RTVEMVEALY NTNKAYLSLP EGAASVAGLI AMMTDHYNLL  120
DDSQSQNEDT SDEHEISDEP PYPTQLWRGR TGAGNVGLET SSMQSNGPVG TSVFSGSSPA  180
RKPRTNRSRA VGKRTSRFPV ESTVQMKLRH HVSPTNFPLQ DEEELESHVA AAHTLVSRRT  240
ASPSVSNTPS RRSLRQVMAQ QNGDSKETLL RTESDTLVKP ATTMTAKADI GSDGSEESKE  300
YDGATRASSS TCADKRVGQD GKNPAACEVR SRLKRPTSKL VELHNVDDKY QDAKDSYVNT  360
DAENELEEEE EGHRHGNGAD LVQVSKQEAL GQWQQHPLQA PERPKKRSRQ LFSGDSNSGL  420
DALATLAASS LSGMELDESL NAFADAAAAV EDNRGDADMA PENETSPNQR DAMDKTKGEQ  480
ANVKIELENV NLGGEGWEGD EKKDKGAVVV ADRQPLTSPE SQKRKKKTTI AKAKPLAPAE  540
DDEVSLKPHS KLKSAAGAKT VSSRPVLKPL IHGSETAAEE GDLTSQGKEA IMEAGEDRAI  600
EIDESLLPLK LRSKKKAVPE KFIAERVCSV TDLGRASLDQ DLPKIQPAFC PHTTPELGPS  660
NAKARVTHCL CTKVRQWCMC EWFYSAIDLP WFARNEFVEY LNHAGLGHVP RLARVEWGVI  720
RSSLGKPRRL SKRFLEEERE KLATYRESVR IHYHELRIGL RECLPADLAH PLTVGQKVIA  780
RHPKTREMHD GTILTVDRCR CRVQFDDPDL GVELVLDIDA MPIHQLENMP EVMRRCHVLV  840
DGGHYPLLQD AKDHKLRVAL SAGVAARAAL NEQLEWPACN VIPFSQIFLN DLSKRAQVDS  900
ADSIRSAKAA TNEAAAAAQK VGLSQPFGIS QLQARDADVR ALADLSRALD KKEALVAELR  960
QMNDEANVNC NGLRISEAFQ RQYATVVLQL KEANKQVATA LVQLRQRNKY QENVVPPWHR  1020
YSPQGVYVLG SSDSANTGEL GPLYSGPGLA EMADSAKEHA RLMVTTAVKA MDAVKDGEDA  1080
FQKLGCALEA LPKLAFAALQ TPSPCVDPVA KATVPLTGAC TSAILPQSLG QSSSSSEAEE  1140
TVDPNFTVTR SQDRMLKQVN DIGVKSLPTT LEAVANGLIQ HLDQAGFSSV NAEGASLLEL  1200
MTSCVATLFM LQTLSDGTYS QSGVNQTLDT AFLSLLPKSA QNHCIYKEIE QQLGIVKAQI  1260
TGHIPVRSTM PFGVDMSIPQ THTA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388273.1	0.0	protein ALWAYS EARLY 3-like isoform X2
TrEMBL	A0A2K1JVW8	0.0	A0A2K1JVW8_PHYPA; Uncharacterized protein
STRING	PP1S31_116V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	6e-94	DNA binding

Link Out ? help Back to Top
Phytozome	Sphfalx0355s0002.1.p