PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0347s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | SBP | ||||||||
Protein Properties | Length: 260aa MW: 27406.6 Da PI: 7.9103 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.2 | 6.5e-40 | 124 | 201 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls+ak+yhrrhkvCe+hska++++++g eqrfCqqCsrfh l+efDe k+sCrrrLa+hner++k+++ Sphfalx0347s0001.1.p 124 RCQVEGCTADLSSAKDYHRRHKVCEMHSKASKAIAAGCEQRFCQQCSRFHVLTEFDEIKHSCRRRLAGHNERQHKPHP 201 6*************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-32 | 119 | 186 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.043 | 122 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.24E-36 | 123 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-30 | 125 | 198 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVSAAVVKSE PLAEVEESED EEEEVVHQAP EAAAAALLKL GLKLGRRSSS SSSTEKNKKE 60 KEVSQGSCST TTPTAAIAPP PAAVAVAACS SSSSPPSTKK QRVTSPSSAT AGGGGNQNPA 120 PPCRCQVEGC TADLSSAKDY HRRHKVCEMH SKASKAIAAG CEQRFCQQCS RFHVLTEFDE 180 IKHSCRRRLA GHNERQHKPH PESSSATAAA AAAINLSFNC RISSPMRSTD AFHIHRTAAD 240 SLTFDGTAAE IHLTLYPTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-32 | 125 | 198 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398584.1 | 2e-46 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A7TTY4 | 4e-45 | A7TTY4_PHYPA; SBP-domain protein 13 | ||||
TrEMBL | A9TAE9 | 4e-45 | A9TAE9_PHYPA; Predicted protein | ||||
STRING | PP1S194_57V6.1 | 7e-46 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 2e-35 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0347s0001.1.p |