PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0336s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HB-other | ||||||||
Protein Properties | Length: 290aa MW: 32765.4 Da PI: 5.2107 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49 | 1e-15 | 20 | 73 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 R++ +++qle Le+++++++ ps + r+ L+k+lgL+e+q +vWF rR k+++ Sphfalx0336s0007.1.p 20 RRKKSASQLELLEKVYAEDKFPSIAFRAGLTKELGLSEKQLQVWFTHRRRKDRR 73 88999***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-16 | 3 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-15 | 5 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.147 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-14 | 16 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.53E-13 | 17 | 73 | No hit | No description |
Pfam | PF00046 | 3.3E-13 | 20 | 73 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MASDDSSPAA SLEKQKRGIR RKKSASQLEL LEKVYAEDKF PSIAFRAGLT KELGLSEKQL 60 QVWFTHRRRK DRRDGIDVDQ LMPHGNNHCN SERQGDDDDE PELLQEMQLH LNSREEDGSC 120 LKDRYPISVV EDDDDDDDDD VIIIESINGT DRSNAKLEKI QKPKPAIARK EIAPQSKQAG 180 EKQLPFWRSN LEPEVNITNN AEAAHELAAI AAVEMQLRGP MQDDGPPLGF EFDSLPPDAF 240 QEFTGRQGGI YSADRSENLL TGRGSARSSR KSKNLKFRDK KKRKLEYFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | RRRKDRRD |
2 | 269 | 284 | RKSKNLKFRDKKKRKL |
3 | 274 | 283 | LKFRDKKKRK |
4 | 279 | 284 | KKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 8e-15 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0336s0007.1.p |