PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0333s0013.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 572aa MW: 63015.3 Da PI: 5.8898 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 456.7 | 1.5e-139 | 64 | 569 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA+av+++++e ++ +L++l las +gdpmqR+a+yf+e+La+r+++s++++y+al++++ + + + l+a+++f+ v+P Sphfalx0333s0013.5.p 64 LIQLLLACANAVANNNMEYTNVFLEQLTLLASLTGDPMQRVATYFMEGLATRITKSWPGVYRALNSTQLP--SIMDMLSARQVFFSVCP 150 689**************************************************************99999..599************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lkfs+lt NqaIl+a+ege+ vH iD+++s ++QW+aLlqaL+ Rp+gpp+lRiTgv++ ++ le+tg+rL++ Ae+l++pf+f Sphfalx0333s0013.5.p 151 YLKFSFLTVNQAILDAMEGEKVVHLIDLEASDPVQWLALLQALSVRPGGPPHLRITGVSE----RRAVLEQTGQRLSQEAEKLDIPFQF 235 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214 ++ v+ +le+l++e Lrvk+gEa+a+++v++lh ll Sphfalx0333s0013.5.p 236 HP-VHAQLENLDVELLRVKTGEAVAISSVMRLHPLLakdhrfsgpgsalgsfdgsshgrmhsprgqsfqrvdclrgecnssrgtcshpq 323 **.7999********************************************************************************** PP GRAS 215 ......................................................................................... 214 Sphfalx0333s0013.5.p 324 qvqvhdravkrpreisdeevelghgsggdsasnaaasagvpadselattgnslvatdgeltserdrsmtnsgsldaqeetgltvreepa 412 ************************************************************************************85544 PP GRAS 215 desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +e +d+vL++++ lsPkv+vvveqe++hn++++lerf+eal+yy a+fdsl++++p++ er+++E++l+g+ei+n+vace Sphfalx0333s0013.5.p 413 AEA----GgaVIDRVLRMLRCLSPKVMVVVEQESNHNGPTLLERFIEALHYYCAMFDSLDSTMPQQCLERVTLEKHLFGQEIKNIVACE 497 333....244569**************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g er+erhe+lekWr+r+e+aGF+++pls+ a qa++ll+ ++ dgyr+ e++g+l+l+Wkd pL+s+S+W Sphfalx0333s0013.5.p 498 GVERVERHEKLEKWRKRMENAGFEALPLSYPAIVQAERLLHSYACDGYRLLENDGCLTLCWKDTPLYSASSW 569 ************************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.643 | 38 | 550 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-137 | 64 | 569 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MPGMIRGETP SLSPSSSLSA STQSFWSRSN LSPHHSTLSS VNGPLPTQHL WLQELRSEER 60 GLYLIQLLLA CANAVANNNM EYTNVFLEQL TLLASLTGDP MQRVATYFME GLATRITKSW 120 PGVYRALNST QLPSIMDMLS ARQVFFSVCP YLKFSFLTVN QAILDAMEGE KVVHLIDLEA 180 SDPVQWLALL QALSVRPGGP PHLRITGVSE RRAVLEQTGQ RLSQEAEKLD IPFQFHPVHA 240 QLENLDVELL RVKTGEAVAI SSVMRLHPLL AKDHRFSGPG SALGSFDGSS HGRMHSPRGQ 300 SFQRVDCLRG ECNSSRGTCS HPQQVQVHDR AVKRPREISD EEVELGHGSG GDSASNAAAS 360 AGVPADSELA TTGNSLVATD GELTSERDRS MTNSGSLDAQ EETGLTVREE PAAEAGGAVI 420 DRVLRMLRCL SPKVMVVVEQ ESNHNGPTLL ERFIEALHYY CAMFDSLDST MPQQCLERVT 480 LEKHLFGQEI KNIVACEGVE RVERHEKLEK WRKRMENAGF EALPLSYPAI VQAERLLHSY 540 ACDGYRLLEN DGCLTLCWKD TPLYSASSWH A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-45 | 52 | 569 | 7 | 378 | Protein SCARECROW |
5b3h_A | 4e-45 | 52 | 569 | 6 | 377 | Protein SCARECROW |
5b3h_D | 4e-45 | 52 | 569 | 6 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381004.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_024381005.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_024381006.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 2e-86 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2K1K9U3 | 0.0 | A0A2K1K9U3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S130_153V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-80 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0333s0013.5.p |
Publications ? help Back to Top | |||
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