PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0328s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 474aa    MW: 51296.4 Da    PI: 6.1328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0328s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-07354395854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           + r RR+ri +++  L+ l+P        K++ +++L +A++Y+k L
  Sphfalx0328s0009.1.p 354 AARVRRERISERLKHLQALIPDG-----DKMDMVTMLDEAINYVKCL 395
                           6799*****************95.....5***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-8343393No hitNo description
PROSITE profilePS5088813.878346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-12350409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-10351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4354395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDDAGLWQAY QAFISTSSRG VDTTISFDQQ QQQRQPFFSL THASTPELQN LVAASDDQLW  60
ELHSGSSPPA AADELYGSSE AAASEIMHNW LQVPGQCCYS HNVMPGPPPS TCMQASNSTQ  120
SGYMQNPLQL EAQHHLCHHP QQQQQRHSQQ IPLPVVPQIN GETIDPQARG SNCTGWRRFS  180
PISNVSNGTA ATNASQETLL QQRQASFATG MKSMSSFNPG PYIGTSMNLQ CTALAGRCSP  240
NSSINLQASF EKEGKKVAAA ASPAVYMQQP WSSGDDEDAP AAAACSRLEY LSTAAHRQVS  300
KKFFTARSQQ SRCSSSSSSC SSMSKAVKKI GPALNTNMKP RARQGSANDP QSIAARVRRE  360
RISERLKHLQ ALIPDGDKMD MVTMLDEAIN YVKCLGLQIR MLKDDSLWPK ALGPLPGTFQ  420
ELLELAGPEF VEGAVQSMSK SEVVESNPKA SLVEVLEEEE PASPPPSATQ IIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-24bHLH family protein