PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0326s0015.5.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 553aa MW: 58838.3 Da PI: 5.0298

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0326s0015.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+peLHerFveav+qLGG+e+AtPk +l+lm+v+gLt++hvkSHLQkYRl Sphfalx0326s0015.5.p 41 KQRLRWSPELHERFVEAVAQLGGPERATPKGVLRLMGVQGLTIYHVKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.723	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-32	39	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-10	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	9.4E-16	179	217	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MYQTKKFAPI SSSFRTATNS AQISPAGAAA AGSSSAGSAA KQRLRWSPEL HERFVEAVAQ 60 LGGPERATPK GVLRLMGVQG LTIYHVKSHL QKYRLAKYDP AAVAAAAAVD SASADDDAAA 120 AAARKNLKNH LLLQPAAYSD HVVPAAARPA ASDTTSSDGT AATAARGVTV DDASLVRNMQ 180 LEVQKRLHEQ LEVQRHLQLR IAAQAKYLRK IVEEQQQQGS STRPALRLAV AQGEEPSTEA 240 NTRDDVAANV VEEEEEEEEA EAEVEEQQLP DLRLSLAAEE VQEELEEQEQ GSAAVVPGAS 300 CSRDASSIVE QAVAAGDAAS SRSPPSIKEL HFEITRSAAL AGFPNDQASS AATPPPPPPL 360 QTHDDDQQWR PRQSAQGTGA SASSTVFTSC SSSWTYSEPA SSTHDESTDH AAPSLKRMRR 420 FEDLYLQPPN MQQISFQGQT VKKEPSTQQQ QQQQQQQQEG SSTLVWPAAG LDQQGDAAVR 480 ISLNSLQSAA AGTDDHQAKT SHDLQADSEA DHAVRQMFSR WEENSAAAAH KSSTSVTAAA 540 IGNARRDSAG AH*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MYQTKKFAPI SSSFRTATNS AQISPAGAAA AGSSSAGSAA KQRLRWSPEL HERFVEAVAQ  60
LGGPERATPK GVLRLMGVQG LTIYHVKSHL QKYRLAKYDP AAVAAAAAVD SASADDDAAA  120
AAARKNLKNH LLLQPAAYSD HVVPAAARPA ASDTTSSDGT AATAARGVTV DDASLVRNMQ  180
LEVQKRLHEQ LEVQRHLQLR IAAQAKYLRK IVEEQQQQGS STRPALRLAV AQGEEPSTEA  240
NTRDDVAANV VEEEEEEEEA EAEVEEQQLP DLRLSLAAEE VQEELEEQEQ GSAAVVPGAS  300
CSRDASSIVE QAVAAGDAAS SRSPPSIKEL HFEITRSAAL AGFPNDQASS AATPPPPPPL  360
QTHDDDQQWR PRQSAQGTGA SASSTVFTSC SSSWTYSEPA SSTHDESTDH AAPSLKRMRR  420
FEDLYLQPPN MQQISFQGQT VKKEPSTQQQ QQQQQQQQEG SSTLVWPAAG LDQQGDAAVR  480
ISLNSLQSAA AGTDDHQAKT SHDLQADSEA DHAVRQMFSR WEENSAAAAH KSSTSVTAAA  540
IGNARRDSAG AH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	40	98	1	59	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	4e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0326s0015.5.p