PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0322s0002.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 499aa    MW: 55169.5 Da    PI: 6.2478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0322s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12366409755
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           + Er+RR+++N+++  Lr+++Pk +      K++K++i+  A++Y+++Lq
  Sphfalx0322s0002.2.p 366 ASERKRRKKLNEGLYSLRSMVPKiS------KMDKVSIVADAIDYLRELQ 409
                           67*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.358359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16364427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-16365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16366427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10366409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-12367413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAAAAAQGAN SSYDENFSWF ESFPQHLWPF PAATEMLYHE KQLNFLTGYP LEEIPEYESR  60
DEDHLHTAAA KDMYATATWN FLPQISGLTS MQPLEALQST EQHHDHLHRG TGCKSAAKLH  120
NVSIPVHEVK ARSKRAYETP VHLRKISPTL CEDPVWMLER LSSRAQTISS RVANDGCDTG  180
MPCTFATRNN SATDRREQAS TLRTWHDVSN AVQDSPAEQR IEANNVTTNT SLKEKTESAD  240
LDWSGTSRKS EQLVVPNGSV MEPVFEPYPS RSCEEDGGTT SCLPAMVQSQ RVGELTSCSR  300
QEVNQGSRRR REVSDVETKP TAVEATTSDH VVKEKEVLYT KNKNLHRERS AAAGSSLAAL  360
AAKNLASERK RRKKLNEGLY SLRSMVPKIS KMDKVSIVAD AIDYLRELQK EVKDIEIENS  420
ELEKRVTRSC VSNSGTAAEA DHLSRRKSEA TAGDFAIDDS KINIDEVTRT GLICLPSTIA  480
QSLSPVKSLA ETLSGGET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367374ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-15bHLH family protein