PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0322s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 563aa MW: 62247.9 Da PI: 6.3336 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 366 | 409 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+++N+++ Lr+++Pk + K++K++i+ A++Y+++Lq Sphfalx0322s0002.1.p 366 ASERKRRKKLNEGLYSLRSMVPKiS------KMDKVSIVADAIDYLRELQ 409 67*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.358 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-16 | 364 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-16 | 365 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 366 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 366 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.83E-12 | 367 | 413 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MAAAAAQGAN SSYDENFSWF ESFPQHLWPF PAATEMLYHE KQLNFLTGYP LEEIPEYESR 60 DEDHLHTAAA KDMYATATWN FLPQISGLTS MQPLEALQST EQHHDHLHRG TGCKSAAKLH 120 NVSIPVHEVK ARSKRAYETP VHLRKISPTL CEDPVWMLER LSSRAQTISS RVANDGCDTG 180 MPCTFATRNN SATDRREQAS TLRTWHDVSN AVQDSPAEQR IEANNVTTNT SLKEKTESAD 240 LDWSGTSRKS EQLVVPNGSV MEPVFEPYPS RSCEEDGGTT SCLPAMVQSQ RVGELTSCSR 300 QEVNQGSRRR REVSDVETKP TAVEATTSDH VVKEKEVLYT KNKNLHRERS AAAGSSLAAL 360 AAKNLASERK RRKKLNEGLY SLRSMVPKIS KMDKVSIVAD AIDYLRELQK EVKDIEIENS 420 ELEKRVTRSC VSNSGTAAEA DHLSRRKSEA TAGDFAIDDS KINIDEVTRT GLICLPSTIA 480 QSLSPVKSLA ETLSGVPGWS QVKLESLGEN TFHLRGICEK TPGVLLQLVR TLELLAGLDV 540 LHASHVCCEN VIINNMVIET KC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 367 | 374 | ERKRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0322s0002.1.p |